Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USE1Q9NZ43 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 AC068587.7-201ENST00000641602 218 ntBASIC19.45■□□□□ 0.7
USE1Q9NZ43 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USE1Q9NZ43 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USE1Q9NZ43 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USE1Q9NZ43 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USE1Q9NZ43 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 AC003102.1-202ENST00000563394 1796 ntBASIC19.44■□□□□ 0.7
USE1Q9NZ43 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.44■□□□□ 0.7
USE1Q9NZ43 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
USE1Q9NZ43 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USE1Q9NZ43 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.43■□□□□ 0.7
USE1Q9NZ43 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.43■□□□□ 0.7
USE1Q9NZ43 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.43■□□□□ 0.7
USE1Q9NZ43 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.43■□□□□ 0.7
USE1Q9NZ43 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.43■□□□□ 0.7
USE1Q9NZ43 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
USE1Q9NZ43 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
USE1Q9NZ43 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.43■□□□□ 0.7
USE1Q9NZ43 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.43■□□□□ 0.7
USE1Q9NZ43 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USE1Q9NZ43 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USE1Q9NZ43 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USE1Q9NZ43 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USE1Q9NZ43 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.42■□□□□ 0.7
USE1Q9NZ43 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USE1Q9NZ43 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USE1Q9NZ43 AFG3L1P-217ENST00000557444 2447 ntBASIC19.42■□□□□ 0.7
USE1Q9NZ43 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
USE1Q9NZ43 AL034346.1-201ENST00000568244 1277 ntBASIC19.42■□□□□ 0.7
USE1Q9NZ43 AL451085.2-201ENST00000605085 799 ntBASIC19.42■□□□□ 0.7
USE1Q9NZ43 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USE1Q9NZ43 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USE1Q9NZ43 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USE1Q9NZ43 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
USE1Q9NZ43 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.42■□□□□ 0.7
USE1Q9NZ43 AC027702.1-201ENST00000563810 1770 ntBASIC19.42■□□□□ 0.7
USE1Q9NZ43 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
USE1Q9NZ43 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USE1Q9NZ43 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
USE1Q9NZ43 AC133637.1-201ENST00000624115 1537 ntBASIC19.41■□□□□ 0.7
USE1Q9NZ43 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USE1Q9NZ43 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USE1Q9NZ43 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.41■□□□□ 0.7
USE1Q9NZ43 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USE1Q9NZ43 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USE1Q9NZ43 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.41■□□□□ 0.7
USE1Q9NZ43 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USE1Q9NZ43 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.41■□□□□ 0.7
USE1Q9NZ43 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
USE1Q9NZ43 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USE1Q9NZ43 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USE1Q9NZ43 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.41■□□□□ 0.7
USE1Q9NZ43 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USE1Q9NZ43 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USE1Q9NZ43 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
USE1Q9NZ43 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USE1Q9NZ43 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
USE1Q9NZ43 Z92544.1-202ENST00000571933 1220 ntBASIC19.4■□□□□ 0.7
USE1Q9NZ43 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
USE1Q9NZ43 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USE1Q9NZ43 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.4■□□□□ 0.7
USE1Q9NZ43 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USE1Q9NZ43 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USE1Q9NZ43 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.4■□□□□ 0.7
USE1Q9NZ43 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USE1Q9NZ43 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms