Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 C1QBPP2-201ENST00000528754 825 ntBASIC23.05■■□□□ 1.28
HIPK3Q9H422 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HIPK3Q9H422 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.05■■□□□ 1.28
HIPK3Q9H422 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC23.05■■□□□ 1.28
HIPK3Q9H422 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HIPK3Q9H422 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HIPK3Q9H422 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.05■■□□□ 1.28
HIPK3Q9H422 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
HIPK3Q9H422 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HIPK3Q9H422 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HIPK3Q9H422 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HIPK3Q9H422 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.04■■□□□ 1.28
HIPK3Q9H422 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HIPK3Q9H422 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.04■■□□□ 1.28
HIPK3Q9H422 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HIPK3Q9H422 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
HIPK3Q9H422 AC091799.1-201ENST00000422823 811 ntBASIC23.04■■□□□ 1.28
HIPK3Q9H422 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HIPK3Q9H422 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HIPK3Q9H422 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC23.04■■□□□ 1.28
HIPK3Q9H422 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HIPK3Q9H422 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HIPK3Q9H422 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.04■■□□□ 1.28
HIPK3Q9H422 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HIPK3Q9H422 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HIPK3Q9H422 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
HIPK3Q9H422 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC23.03■■□□□ 1.28
HIPK3Q9H422 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.03■■□□□ 1.28
HIPK3Q9H422 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HIPK3Q9H422 CDV3P1-201ENST00000471403 739 ntBASIC23.03■■□□□ 1.28
HIPK3Q9H422 MIR4497-201ENST00000583208 89 ntBASIC23.03■■□□□ 1.28
HIPK3Q9H422 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.03■■□□□ 1.28
HIPK3Q9H422 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
HIPK3Q9H422 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HIPK3Q9H422 AC139530.1-201ENST00000575312 1977 ntBASIC23.03■■□□□ 1.28
HIPK3Q9H422 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HIPK3Q9H422 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
HIPK3Q9H422 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HIPK3Q9H422 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
HIPK3Q9H422 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.02■■□□□ 1.28
HIPK3Q9H422 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HIPK3Q9H422 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.02■■□□□ 1.28
HIPK3Q9H422 PNMA6B-201ENST00000538162 1200 ntBASIC23.02■■□□□ 1.28
HIPK3Q9H422 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC23.02■■□□□ 1.28
HIPK3Q9H422 AL589743.5-201ENST00000616611 1050 ntBASIC23.02■■□□□ 1.28
HIPK3Q9H422 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC23.02■■□□□ 1.28
HIPK3Q9H422 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
HIPK3Q9H422 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HIPK3Q9H422 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.02■■□□□ 1.28
HIPK3Q9H422 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HIPK3Q9H422 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.01■■□□□ 1.27
HIPK3Q9H422 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HIPK3Q9H422 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
HIPK3Q9H422 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HIPK3Q9H422 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HIPK3Q9H422 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.01■■□□□ 1.27
HIPK3Q9H422 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HIPK3Q9H422 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC23.01■■□□□ 1.27
HIPK3Q9H422 KRT17P3-201ENST00000420566 1262 ntBASIC23.01■■□□□ 1.27
HIPK3Q9H422 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC23.01■■□□□ 1.27
HIPK3Q9H422 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC23.01■■□□□ 1.27
HIPK3Q9H422 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC23.01■■□□□ 1.27
HIPK3Q9H422 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
HIPK3Q9H422 AC003102.1-202ENST00000563394 1796 ntBASIC23.01■■□□□ 1.27
HIPK3Q9H422 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HIPK3Q9H422 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.01■■□□□ 1.27
HIPK3Q9H422 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HIPK3Q9H422 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
HIPK3Q9H422 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HIPK3Q9H422 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HIPK3Q9H422 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
HIPK3Q9H422 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
HIPK3Q9H422 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC23■■□□□ 1.27
HIPK3Q9H422 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23■■□□□ 1.27
HIPK3Q9H422 AC073912.3-201ENST00000624414 853 ntBASIC23■■□□□ 1.27
HIPK3Q9H422 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23■■□□□ 1.27
HIPK3Q9H422 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23■■□□□ 1.27
HIPK3Q9H422 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23■■□□□ 1.27
HIPK3Q9H422 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HIPK3Q9H422 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
HIPK3Q9H422 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
HIPK3Q9H422 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
HIPK3Q9H422 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
HIPK3Q9H422 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
HIPK3Q9H422 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HIPK3Q9H422 AC092368.3-202ENST00000574180 1591 ntBASIC22.99■■□□□ 1.27
HIPK3Q9H422 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
HIPK3Q9H422 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HIPK3Q9H422 AC245052.3-201ENST00000450182 901 ntBASIC22.99■■□□□ 1.27
HIPK3Q9H422 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC22.99■■□□□ 1.27
HIPK3Q9H422 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HIPK3Q9H422 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
HIPK3Q9H422 MCRIP2P1-201ENST00000394346 511 ntBASIC22.98■■□□□ 1.27
HIPK3Q9H422 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
HIPK3Q9H422 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.98■■□□□ 1.27
HIPK3Q9H422 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.98■■□□□ 1.27
HIPK3Q9H422 RN7SL471P-201ENST00000580476 299 ntBASIC22.98■■□□□ 1.27
HIPK3Q9H422 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.98■■□□□ 1.27
HIPK3Q9H422 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.98■■□□□ 1.27
HIPK3Q9H422 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms