Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 CYP2D8P-201ENST00000433633 1490 ntBASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 AC246785.2-201ENST00000432512 513 ntBASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 AC010203.1-204ENST00000548782 407 ntBASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 AC243732.1-201ENST00000612648 864 ntBASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 AC008175.2-201ENST00000612840 297 ntBASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 AC100791.3-201ENST00000617619 330 ntBASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.65■■□□□ 1.06
COL25A1Q9BXS0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL25A1Q9BXS0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL25A1Q9BXS0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL25A1Q9BXS0 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL25A1Q9BXS0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL25A1Q9BXS0 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.65■■□□□ 1.06
COL25A1Q9BXS0 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 CLEC4GP1-201ENST00000596555 870 ntBASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 AP000550.4-202ENST00000639755 178 ntBASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL25A1Q9BXS0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 UNC93B2-201ENST00000285383 730 ntBASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 BX664615.1-201ENST00000443558 458 ntBASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 AC010947.1-201ENST00000623454 693 ntBASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 AC087633.2-202ENST00000565166 1439 ntBASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
COL25A1Q9BXS0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 AC145676.1-201ENST00000514988 2004 ntBASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 AC022616.7-201ENST00000525383 220 ntBASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL25A1Q9BXS0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 ABCB10P1-201ENST00000614297 2181 ntBASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 AC027702.1-201ENST00000563810 1770 ntBASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL25A1Q9BXS0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 AF186192.3-201ENST00000583427 947 ntBASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL25A1Q9BXS0 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms