Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.67■■□□□ 1.06
TTC28Q96AY4 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TTC28Q96AY4 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
TTC28Q96AY4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
TTC28Q96AY4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TTC28Q96AY4 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.67■■□□□ 1.06
TTC28Q96AY4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.67■■□□□ 1.06
TTC28Q96AY4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.67■■□□□ 1.06
TTC28Q96AY4 AC006538.3-201ENST00000612495 578 ntBASIC21.67■■□□□ 1.06
TTC28Q96AY4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
TTC28Q96AY4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
TTC28Q96AY4 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.67■■□□□ 1.06
TTC28Q96AY4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TTC28Q96AY4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TTC28Q96AY4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 DUSP8P3-201ENST00000399571 1760 ntBASIC21.66■■□□□ 1.06
TTC28Q96AY4 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
TTC28Q96AY4 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TTC28Q96AY4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TTC28Q96AY4 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TTC28Q96AY4 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TTC28Q96AY4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 AC243732.1-201ENST00000612648 864 ntBASIC21.66■■□□□ 1.06
TTC28Q96AY4 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TTC28Q96AY4 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
TTC28Q96AY4 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TTC28Q96AY4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.65■■□□□ 1.06
TTC28Q96AY4 AC009947.2-201ENST00000444014 672 ntBASIC21.65■■□□□ 1.06
TTC28Q96AY4 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TTC28Q96AY4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TTC28Q96AY4 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.65■■□□□ 1.06
TTC28Q96AY4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TTC28Q96AY4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TTC28Q96AY4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
TTC28Q96AY4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
TTC28Q96AY4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TTC28Q96AY4 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TTC28Q96AY4 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
TTC28Q96AY4 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TTC28Q96AY4 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TTC28Q96AY4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TTC28Q96AY4 AP000593.1-201ENST00000393668 712 ntBASIC21.64■■□□□ 1.05
TTC28Q96AY4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TTC28Q96AY4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TTC28Q96AY4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TTC28Q96AY4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TTC28Q96AY4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.64■■□□□ 1.05
TTC28Q96AY4 LINC01568-207ENST00000641790 1380 ntBASIC21.63■■□□□ 1.05
TTC28Q96AY4 LINC00543-201ENST00000567234 1845 ntBASIC21.63■■□□□ 1.05
TTC28Q96AY4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TTC28Q96AY4 OR7E47P-201ENST00000546390 1422 ntBASIC21.63■■□□□ 1.05
TTC28Q96AY4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 AC105020.6-201ENST00000621523 1217 ntBASIC21.63■■□□□ 1.05
TTC28Q96AY4 AC120498.10-201ENST00000621827 505 ntBASIC21.63■■□□□ 1.05
TTC28Q96AY4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TTC28Q96AY4 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TTC28Q96AY4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TTC28Q96AY4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.63■■□□□ 1.05
TTC28Q96AY4 AL031963.3-201ENST00000606441 850 ntBASIC21.63■■□□□ 1.05
TTC28Q96AY4 AL121906.2-201ENST00000621597 723 ntBASIC21.63■■□□□ 1.05
TTC28Q96AY4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.62■■□□□ 1.05
TTC28Q96AY4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
TTC28Q96AY4 SLC25A3P1-201ENST00000443844 931 ntBASIC21.62■■□□□ 1.05
TTC28Q96AY4 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.62■■□□□ 1.05
TTC28Q96AY4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.62■■□□□ 1.05
TTC28Q96AY4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.62■■□□□ 1.05
TTC28Q96AY4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms