Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 PBX2P1-201ENST00000493219 1291 ntBASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 AC105233.4-201ENST00000642045 216 ntBASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 AC009237.3-201ENST00000393279 1427 ntBASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.71■■□□□ 1.07
ATG4AQ8WYN0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.7■■□□□ 1.07
ATG4AQ8WYN0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
ATG4AQ8WYN0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ATG4AQ8WYN0 AC006128.1-201ENST00000624704 1661 ntBASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 AP001330.3-201ENST00000520123 633 ntBASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 AC027682.1-201ENST00000562846 899 ntBASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 AC008406.3-201ENST00000620001 1374 ntBASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 AC005224.4-201ENST00000583262 1652 ntBASIC21.69■■□□□ 1.06
ATG4AQ8WYN0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
ATG4AQ8WYN0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms