Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CXCL12P48061 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.05■□□□□ 0.96
CXCL12P48061 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL12P48061 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL12P48061 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.05■□□□□ 0.96
CXCL12P48061 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL12P48061 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL12P48061 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.05■□□□□ 0.96
CXCL12P48061 FAM210CP-201ENST00000445714 574 ntBASIC21.05■□□□□ 0.96
CXCL12P48061 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL12P48061 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.05■□□□□ 0.96
CXCL12P48061 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CXCL12P48061 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.05■□□□□ 0.96
CXCL12P48061 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL12P48061 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL12P48061 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.05■□□□□ 0.96
CXCL12P48061 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CXCL12P48061 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CXCL12P48061 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CXCL12P48061 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CXCL12P48061 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CXCL12P48061 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CXCL12P48061 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.04■□□□□ 0.96
CXCL12P48061 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CXCL12P48061 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.04■□□□□ 0.96
CXCL12P48061 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
CXCL12P48061 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.04■□□□□ 0.96
CXCL12P48061 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CXCL12P48061 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CXCL12P48061 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.03■□□□□ 0.96
CXCL12P48061 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CXCL12P48061 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CXCL12P48061 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.03■□□□□ 0.96
CXCL12P48061 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.03■□□□□ 0.96
CXCL12P48061 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.03■□□□□ 0.96
CXCL12P48061 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CXCL12P48061 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CXCL12P48061 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CXCL12P48061 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CXCL12P48061 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL12P48061 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL12P48061 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.02■□□□□ 0.96
CXCL12P48061 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.02■□□□□ 0.96
CXCL12P48061 AC087742.1-201ENST00000575880 1738 ntBASIC21.02■□□□□ 0.96
CXCL12P48061 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL12P48061 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.02■□□□□ 0.96
CXCL12P48061 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL12P48061 KRT18P68-201ENST00000392293 1000 ntBASIC21.02■□□□□ 0.96
CXCL12P48061 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.02■□□□□ 0.96
CXCL12P48061 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
CXCL12P48061 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.02■□□□□ 0.96
CXCL12P48061 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL12P48061 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
CXCL12P48061 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CXCL12P48061 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL12P48061 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL12P48061 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CXCL12P48061 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CXCL12P48061 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CXCL12P48061 AC139530.1-201ENST00000575312 1977 ntBASIC21.01■□□□□ 0.95
CXCL12P48061 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CXCL12P48061 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CXCL12P48061 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CXCL12P48061 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.01■□□□□ 0.95
CXCL12P48061 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.01■□□□□ 0.95
CXCL12P48061 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.01■□□□□ 0.95
CXCL12P48061 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.01■□□□□ 0.95
CXCL12P48061 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CXCL12P48061 LINC01023-201ENST00000606054 436 ntBASIC21.01■□□□□ 0.95
CXCL12P48061 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CXCL12P48061 AC003102.1-202ENST00000563394 1796 ntBASIC21■□□□□ 0.95
CXCL12P48061 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CXCL12P48061 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21■□□□□ 0.95
CXCL12P48061 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21■□□□□ 0.95
CXCL12P48061 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21■□□□□ 0.95
CXCL12P48061 SOX15-203ENST00000570788 1093 ntBASIC21■□□□□ 0.95
CXCL12P48061 AC233263.1-201ENST00000578059 224 ntBASIC21■□□□□ 0.95
CXCL12P48061 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21■□□□□ 0.95
CXCL12P48061 AC069544.1-201ENST00000609399 999 ntBASIC21■□□□□ 0.95
CXCL12P48061 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL12P48061 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CXCL12P48061 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
CXCL12P48061 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CXCL12P48061 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CXCL12P48061 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CXCL12P48061 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CXCL12P48061 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.99■□□□□ 0.95
CXCL12P48061 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
CXCL12P48061 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.99■□□□□ 0.95
CXCL12P48061 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.99■□□□□ 0.95
CXCL12P48061 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.99■□□□□ 0.95
CXCL12P48061 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms