Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-1P43699 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-1P43699 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-1P43699 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NKX2-1P43699 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
NKX2-1P43699 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
NKX2-1P43699 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-1P43699 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-1P43699 AL391422.3-201ENST00000603791 2761 ntBASIC17.11■□□□□ 0.33
NKX2-1P43699 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.11■□□□□ 0.33
NKX2-1P43699 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX2-1P43699 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 CD72-202ENST00000378430 585 ntTSL 3 BASIC17.11■□□□□ 0.33
NKX2-1P43699 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 MTDHP2-201ENST00000601468 714 ntBASIC17.11■□□□□ 0.33
NKX2-1P43699 AL451085.2-201ENST00000605085 799 ntBASIC17.11■□□□□ 0.33
NKX2-1P43699 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NKX2-1P43699 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX2-1P43699 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 PCDHAC2-203ENST00000615316 3011 ntBASIC17.11■□□□□ 0.33
NKX2-1P43699 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NKX2-1P43699 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NKX2-1P43699 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
NKX2-1P43699 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-1P43699 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
NKX2-1P43699 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.1■□□□□ 0.33
NKX2-1P43699 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
NKX2-1P43699 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX2-1P43699 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
NKX2-1P43699 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.1■□□□□ 0.33
NKX2-1P43699 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX2-1P43699 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.1■□□□□ 0.33
NKX2-1P43699 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX2-1P43699 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.1■□□□□ 0.33
NKX2-1P43699 AC092028.1-203ENST00000608262 953 ntBASIC17.1■□□□□ 0.33
NKX2-1P43699 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX2-1P43699 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX2-1P43699 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.1■□□□□ 0.33
NKX2-1P43699 AC003102.1-202ENST00000563394 1796 ntBASIC17.1■□□□□ 0.33
NKX2-1P43699 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-1P43699 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.09■□□□□ 0.33
NKX2-1P43699 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
NKX2-1P43699 TFPT-201ENST00000391757 774 ntTSL 5 BASIC17.09■□□□□ 0.33
NKX2-1P43699 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-1P43699 HES6-204ENST00000409182 863 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC17.09■□□□□ 0.33
NKX2-1P43699 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 AC241377.3-202ENST00000626088 1088 ntBASIC17.09■□□□□ 0.33
NKX2-1P43699 AC241585.3-202ENST00000628937 1088 ntBASIC17.09■□□□□ 0.33
NKX2-1P43699 AC245100.8-202ENST00000629247 1058 ntBASIC17.09■□□□□ 0.33
NKX2-1P43699 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.09■□□□□ 0.33
NKX2-1P43699 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-1P43699 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-1P43699 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-1P43699 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-1P43699 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
NKX2-1P43699 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-1P43699 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-1P43699 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NKX2-1P43699 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-1P43699 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NKX2-1P43699 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
NKX2-1P43699 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.08■□□□□ 0.33
NKX2-1P43699 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NKX2-1P43699 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.08■□□□□ 0.33
NKX2-1P43699 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NKX2-1P43699 GTSE1-AS1-202ENST00000623117 1518 ntBASIC17.08■□□□□ 0.32
NKX2-1P43699 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX2-1P43699 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
NKX2-1P43699 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC17.08■□□□□ 0.32
NKX2-1P43699 Z92544.1-202ENST00000571933 1220 ntBASIC17.08■□□□□ 0.32
NKX2-1P43699 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC17.08■□□□□ 0.32
NKX2-1P43699 AFG3L1P-217ENST00000557444 2447 ntBASIC17.08■□□□□ 0.32
NKX2-1P43699 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.08■□□□□ 0.32
NKX2-1P43699 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms