Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.2■□□□□ 0.66
MSX1P28360 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX1P28360 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.2■□□□□ 0.66
MSX1P28360 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MSX1P28360 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.2■□□□□ 0.66
MSX1P28360 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX1P28360 KRT18P11-201ENST00000435214 1283 ntBASIC19.2■□□□□ 0.66
MSX1P28360 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.2■□□□□ 0.66
MSX1P28360 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX1P28360 AC010141.2-201ENST00000452426 721 ntBASIC19.2■□□□□ 0.66
MSX1P28360 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX1P28360 KRT18P20-201ENST00000548986 1279 ntBASIC19.2■□□□□ 0.66
MSX1P28360 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.2■□□□□ 0.66
MSX1P28360 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX1P28360 PKD1P6-201ENST00000343738 4769 ntBASIC19.2■□□□□ 0.66
MSX1P28360 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MSX1P28360 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
MSX1P28360 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.2■□□□□ 0.66
MSX1P28360 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX1P28360 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX1P28360 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.2■□□□□ 0.66
MSX1P28360 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.19■□□□□ 0.66
MSX1P28360 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.19■□□□□ 0.66
MSX1P28360 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 CROCCP5-201ENST00000436658 830 ntBASIC19.19■□□□□ 0.66
MSX1P28360 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.19■□□□□ 0.66
MSX1P28360 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
MSX1P28360 AP001160.3-201ENST00000601484 763 ntBASIC19.19■□□□□ 0.66
MSX1P28360 AC120498.10-201ENST00000621827 505 ntBASIC19.19■□□□□ 0.66
MSX1P28360 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
MSX1P28360 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
MSX1P28360 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.19■□□□□ 0.66
MSX1P28360 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.19■□□□□ 0.66
MSX1P28360 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.19■□□□□ 0.66
MSX1P28360 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
MSX1P28360 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.19■□□□□ 0.66
MSX1P28360 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSX1P28360 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.19■□□□□ 0.66
MSX1P28360 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.19■□□□□ 0.66
MSX1P28360 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.18■□□□□ 0.66
MSX1P28360 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.18■□□□□ 0.66
MSX1P28360 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.18■□□□□ 0.66
MSX1P28360 AL109923.1-201ENST00000618799 583 ntBASIC19.18■□□□□ 0.66
MSX1P28360 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
MSX1P28360 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.18■□□□□ 0.66
MSX1P28360 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX1P28360 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
MSX1P28360 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
MSX1P28360 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.17■□□□□ 0.66
MSX1P28360 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.17■□□□□ 0.66
MSX1P28360 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.17■□□□□ 0.66
MSX1P28360 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.17■□□□□ 0.66
MSX1P28360 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.17■□□□□ 0.66
MSX1P28360 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSX1P28360 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.16■□□□□ 0.66
MSX1P28360 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX1P28360 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX1P28360 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MSX1P28360 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MSX1P28360 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX1P28360 AL355802.2-201ENST00000402069 882 ntBASIC19.16■□□□□ 0.66
MSX1P28360 NCF1B-203ENST00000435988 1254 ntBASIC19.16■□□□□ 0.66
MSX1P28360 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.16■□□□□ 0.66
MSX1P28360 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX1P28360 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX1P28360 AC011767.1-201ENST00000617410 1153 ntBASIC19.16■□□□□ 0.66
MSX1P28360 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX1P28360 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.16■□□□□ 0.66
MSX1P28360 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.16■□□□□ 0.66
MSX1P28360 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms