Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
COL4A1P02462 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.9■■□□□ 1.74
COL4A1P02462 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
COL4A1P02462 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC25.9■■□□□ 1.74
COL4A1P02462 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC25.9■■□□□ 1.74
COL4A1P02462 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL4A1P02462 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL4A1P02462 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
COL4A1P02462 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC25.9■■□□□ 1.74
COL4A1P02462 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL4A1P02462 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25.9■■□□□ 1.74
COL4A1P02462 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
COL4A1P02462 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
COL4A1P02462 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC25.9■■□□□ 1.74
COL4A1P02462 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC25.9■■□□□ 1.74
COL4A1P02462 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC25.9■■□□□ 1.74
COL4A1P02462 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
COL4A1P02462 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
COL4A1P02462 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC25.89■■□□□ 1.74
COL4A1P02462 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
COL4A1P02462 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC25.89■■□□□ 1.73
COL4A1P02462 GCSHP5-201ENST00000443090 522 ntBASIC25.89■■□□□ 1.73
COL4A1P02462 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC25.89■■□□□ 1.73
COL4A1P02462 AC008403.3-201ENST00000598924 454 ntBASIC25.89■■□□□ 1.73
COL4A1P02462 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
COL4A1P02462 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
COL4A1P02462 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC25.88■■□□□ 1.73
COL4A1P02462 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
COL4A1P02462 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC25.88■■□□□ 1.73
COL4A1P02462 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
COL4A1P02462 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
COL4A1P02462 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC25.88■■□□□ 1.73
COL4A1P02462 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
COL4A1P02462 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
COL4A1P02462 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL4A1P02462 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
COL4A1P02462 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC25.87■■□□□ 1.73
COL4A1P02462 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.87■■□□□ 1.73
COL4A1P02462 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL4A1P02462 UNC93B5-201ENST00000530315 699 ntBASIC25.87■■□□□ 1.73
COL4A1P02462 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL4A1P02462 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
COL4A1P02462 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC25.87■■□□□ 1.73
COL4A1P02462 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
COL4A1P02462 KRT18P29-201ENST00000397031 1267 ntBASIC25.87■■□□□ 1.73
COL4A1P02462 AC097658.1-201ENST00000475555 843 ntBASIC25.87■■□□□ 1.73
COL4A1P02462 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC25.87■■□□□ 1.73
COL4A1P02462 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
COL4A1P02462 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC25.87■■□□□ 1.73
COL4A1P02462 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL4A1P02462 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
COL4A1P02462 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.86■■□□□ 1.73
COL4A1P02462 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.86■■□□□ 1.73
COL4A1P02462 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
COL4A1P02462 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL4A1P02462 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
COL4A1P02462 ESRRAP1-201ENST00000400596 1257 ntBASIC25.86■■□□□ 1.73
COL4A1P02462 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC25.86■■□□□ 1.73
COL4A1P02462 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC25.86■■□□□ 1.73
COL4A1P02462 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC25.86■■□□□ 1.73
COL4A1P02462 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC25.86■■□□□ 1.73
COL4A1P02462 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
COL4A1P02462 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL4A1P02462 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL4A1P02462 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
COL4A1P02462 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL4A1P02462 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC25.85■■□□□ 1.73
COL4A1P02462 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL4A1P02462 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC25.85■■□□□ 1.73
COL4A1P02462 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC25.85■■□□□ 1.73
COL4A1P02462 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC25.85■■□□□ 1.73
COL4A1P02462 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC25.85■■□□□ 1.73
COL4A1P02462 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL4A1P02462 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC25.85■■□□□ 1.73
COL4A1P02462 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL4A1P02462 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL4A1P02462 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL4A1P02462 CYP2T3P-201ENST00000601990 817 ntBASIC25.84■■□□□ 1.73
COL4A1P02462 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC25.84■■□□□ 1.73
COL4A1P02462 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL4A1P02462 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC25.84■■□□□ 1.73
COL4A1P02462 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL4A1P02462 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL4A1P02462 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL4A1P02462 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL4A1P02462 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL4A1P02462 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL4A1P02462 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC25.83■■□□□ 1.73
COL4A1P02462 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC25.83■■□□□ 1.73
COL4A1P02462 AC006058.3-201ENST00000606217 1069 ntBASIC25.83■■□□□ 1.73
COL4A1P02462 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL4A1P02462 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC25.83■■□□□ 1.73
COL4A1P02462 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL4A1P02462 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL4A1P02462 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL4A1P02462 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL4A1P02462 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
COL4A1P02462 FAM21FP-204ENST00000608637 956 ntBASIC25.83■■□□□ 1.73
COL4A1P02462 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC25.83■■□□□ 1.73
COL4A1P02462 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms