Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC24.37■■□□□ 1.49
CDKL5O76039 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC24.37■■□□□ 1.49
CDKL5O76039 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.37■■□□□ 1.49
CDKL5O76039 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CDKL5O76039 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC24.37■■□□□ 1.49
CDKL5O76039 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.37■■□□□ 1.49
CDKL5O76039 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.37■■□□□ 1.49
CDKL5O76039 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.37■■□□□ 1.49
CDKL5O76039 PALM-207ENST00000590161 2137 ntTSL 4 BASIC24.37■■□□□ 1.49
CDKL5O76039 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CDKL5O76039 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
CDKL5O76039 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
CDKL5O76039 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.36■■□□□ 1.49
CDKL5O76039 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDKL5O76039 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CDKL5O76039 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.36■■□□□ 1.49
CDKL5O76039 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.36■■□□□ 1.49
CDKL5O76039 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDKL5O76039 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDKL5O76039 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDKL5O76039 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.35■■□□□ 1.49
CDKL5O76039 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDKL5O76039 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDKL5O76039 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.35■■□□□ 1.49
CDKL5O76039 AC061975.6-201ENST00000579045 1553 ntBASIC24.35■■□□□ 1.49
CDKL5O76039 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDKL5O76039 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.35■■□□□ 1.49
CDKL5O76039 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CDKL5O76039 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
CDKL5O76039 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDKL5O76039 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDKL5O76039 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
CDKL5O76039 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CDKL5O76039 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC24.34■■□□□ 1.49
CDKL5O76039 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CDKL5O76039 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CDKL5O76039 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.34■■□□□ 1.49
CDKL5O76039 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CDKL5O76039 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CDKL5O76039 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC24.34■■□□□ 1.49
CDKL5O76039 AC010141.2-201ENST00000452426 721 ntBASIC24.34■■□□□ 1.49
CDKL5O76039 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CDKL5O76039 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.34■■□□□ 1.49
CDKL5O76039 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.34■■□□□ 1.49
CDKL5O76039 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.34■■□□□ 1.49
CDKL5O76039 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CDKL5O76039 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC24.34■■□□□ 1.49
CDKL5O76039 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
CDKL5O76039 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CDKL5O76039 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
CDKL5O76039 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC24.33■■□□□ 1.49
CDKL5O76039 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC24.33■■□□□ 1.49
CDKL5O76039 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
CDKL5O76039 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC24.33■■□□□ 1.49
CDKL5O76039 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.33■■□□□ 1.49
CDKL5O76039 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
CDKL5O76039 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CDKL5O76039 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC24.33■■□□□ 1.49
CDKL5O76039 DUX4L2-201ENST00000561772 1275 ntBASIC24.33■■□□□ 1.49
CDKL5O76039 AC104187.1-201ENST00000607510 612 ntBASIC24.33■■□□□ 1.49
CDKL5O76039 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.33■■□□□ 1.49
CDKL5O76039 DUX4L6-201ENST00000626483 1275 ntBASIC24.33■■□□□ 1.49
CDKL5O76039 DUX4L1-201ENST00000627662 1275 ntBASIC24.33■■□□□ 1.49
CDKL5O76039 DUX4L8-201ENST00000629013 1275 ntBASIC24.33■■□□□ 1.49
CDKL5O76039 DUX4L3-201ENST00000630187 1275 ntBASIC24.33■■□□□ 1.49
CDKL5O76039 DUX4L7-201ENST00000630678 1275 ntBASIC24.33■■□□□ 1.49
CDKL5O76039 DUX4L5-201ENST00000630834 1275 ntBASIC24.33■■□□□ 1.49
CDKL5O76039 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CDKL5O76039 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC24.33■■□□□ 1.48
CDKL5O76039 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDKL5O76039 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDKL5O76039 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
CDKL5O76039 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDKL5O76039 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.32■■□□□ 1.48
CDKL5O76039 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDKL5O76039 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC24.32■■□□□ 1.48
CDKL5O76039 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.32■■□□□ 1.48
CDKL5O76039 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.32■■□□□ 1.48
CDKL5O76039 AC120498.10-201ENST00000621827 505 ntBASIC24.32■■□□□ 1.48
CDKL5O76039 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC24.32■■□□□ 1.48
CDKL5O76039 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDKL5O76039 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CDKL5O76039 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDKL5O76039 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
CDKL5O76039 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDKL5O76039 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
CDKL5O76039 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
CDKL5O76039 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC24.31■■□□□ 1.48
CDKL5O76039 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.31■■□□□ 1.48
CDKL5O76039 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDKL5O76039 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CDKL5O76039 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CDKL5O76039 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.31■■□□□ 1.48
CDKL5O76039 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDKL5O76039 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CDKL5O76039 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CDKL5O76039 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.31■■□□□ 1.48
CDKL5O76039 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.31■■□□□ 1.48
CDKL5O76039 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.31■■□□□ 1.48
CDKL5O76039 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms