Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.344e-7■■■□□ 17.2
SMNDC1O75940 VARS-220ENST00000461874 845 ntTSL 517.04■□□□□ 0.324e-7■■■□□ 17.2
SMNDC1O75940 IER3-202ENST00000376377 1350 ntBASIC16.57■□□□□ 0.244e-10■■■□□ 17.2
SMNDC1O75940 CDC6-203ENST00000577249 541 ntTSL 416.49■□□□□ 0.234e-7■■■□□ 17.2
SMNDC1O75940 TACC3-202ENST00000404054 2771 nt15.87■□□□□ 0.134e-10■■■□□ 17.2
SMNDC1O75940 CACNA2D4-211ENST00000540728 596 ntTSL 215.43■□□□□ 0.064e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-214ENST00000541616 576 ntTSL 415.43■□□□□ 0.064e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-212ENST00000541331 498 ntTSL 415.37■□□□□ 0.054e-7■■■□□ 17.2
SMNDC1O75940 VARS-216ENST00000428445 863 ntTSL 514.99□□□□□ -0.014e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-217ENST00000545595 1615 ntTSL 1 (best)14.68□□□□□ -0.064e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-201ENST00000280663 5936 ntTSL 213.94□□□□□ -0.184e-7■■■□□ 17.2
SMNDC1O75940 VARS-219ENST00000461328 662 ntTSL 313.82□□□□□ -0.24e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.24e-7■■■□□ 17.2
SMNDC1O75940 TACC3-207ENST00000470808 947 ntTSL 213.77□□□□□ -0.214e-10■■■□□ 17.2
SMNDC1O75940 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.76□□□□□ -0.214e-7■■■□□ 17.2
SMNDC1O75940 VARS-223ENST00000474643 885 ntTSL 513.7□□□□□ -0.224e-7■■■□□ 17.2
SMNDC1O75940 CDC6-204ENST00000580824 696 ntTSL 313.67□□□□□ -0.224e-7■■■□□ 17.2
SMNDC1O75940 STAT2-206ENST00000556140 1454 ntTSL 213.64□□□□□ -0.234e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-201ENST00000349496 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.234e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-205ENST00000536846 895 ntTSL 513.36□□□□□ -0.274e-7■■■□□ 17.2
SMNDC1O75940 AL662899.3-203ENST00000409691 1903 ntTSL 313.25□□□□□ -0.294e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-208ENST00000513781 759 ntTSL 313.13□□□□□ -0.314e-7■■■□□ 17.2
SMNDC1O75940 CDC6-201ENST00000209728 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.334e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-206ENST00000537784 2876 ntTSL 1 (best)12.97□□□□□ -0.334e-7■■■□□ 17.2
SMNDC1O75940 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.344e-10■■■□□ 17.2
SMNDC1O75940 CTNNB1-203ENST00000396185 3356 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.354e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-225ENST00000589502 680 ntTSL 312.69□□□□□ -0.384e-7■■■□□ 17.2
SMNDC1O75940 VARS-226ENST00000483275 450 ntTSL 312.61□□□□□ -0.394e-7■■■□□ 17.2
SMNDC1O75940 AL662899.3-201ENST00000375880 2487 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.474e-7■■■□□ 17.2
SMNDC1O75940 PPP2R3C-202ENST00000553273 1402 ntTSL 1 (best)12.07□□□□□ -0.484e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-219ENST00000585708 3273 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.484e-7■■■□□ 17.2
SMNDC1O75940 STAT2-201ENST00000314128 3259 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.54e-7■■■□□ 17.2
SMNDC1O75940 LY6G5B-207ENST00000375864 2654 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.524e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-207ENST00000537923 556 ntTSL 411.79□□□□□ -0.524e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-209ENST00000538450 1498 ntTSL 2 BASIC11.65□□□□□ -0.544e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-202ENST00000382722 5475 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.634e-7■■■□□ 17.2
SMNDC1O75940 VIL1-203ENST00000419986 639 ntTSL 311.01□□□□□ -0.654e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-204ENST00000405570 2513 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.664e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-218ENST00000585385 976 ntTSL 510.79□□□□□ -0.684e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-221ENST00000586184 3499 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.744e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-223ENST00000588077 3311 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.744e-7■■■□□ 17.2
SMNDC1O75940 PPP2R3C-201ENST00000261475 1839 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.764e-7■■■□□ 17.2
SMNDC1O75940 LY6G5B-208ENST00000409525 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.764e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-204ENST00000503641 539 ntTSL 3 BASIC10.29□□□□□ -0.764e-7■■■□□ 17.2
SMNDC1O75940 AL662899.3-202ENST00000617558 991 ntTSL 1 (best) BASIC10.25□□□□□ -0.774e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-206ENST00000431914 634 ntTSL 410.16□□□□□ -0.784e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-207ENST00000513347 2214 ntTSL 210.06□□□□□ -0.84e-7■■■□□ 17.2
SMNDC1O75940 STAT2-210ENST00000557235 3073 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.84e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-222ENST00000587995 3883 ntTSL 5 BASIC9.97□□□□□ -0.814e-7■■■□□ 17.2
SMNDC1O75940 PPP2R3C-217ENST00000557217 1846 ntTSL 1 (best)9.97□□□□□ -0.814e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-207ENST00000433400 596 ntTSL 49.94□□□□□ -0.824e-7■■■□□ 17.2
SMNDC1O75940 XRN2-201ENST00000377191 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.834e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-201ENST00000355938 598 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.844e-7■■■□□ 17.2
SMNDC1O75940 PPP2R3C-204ENST00000554222 1719 ntTSL 29.65□□□□□ -0.874e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-203ENST00000444595 4450 ntTSL 1 (best)9.62□□□□□ -0.874e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-209ENST00000514808 359 ntTSL 2 BASIC9.56□□□□□ -0.884e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-205ENST00000504591 401 ntTSL 29.56□□□□□ -0.884e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-206ENST00000506855 468 ntTSL 3 BASIC9.56□□□□□ -0.884e-7■■■□□ 17.2
SMNDC1O75940 PPP2R3C-209ENST00000554899 762 ntTSL 39.37□□□□□ -0.914e-7■■■□□ 17.2
SMNDC1O75940 HSP90AB2P-202ENST00000602906 1277 ntTSL 1 (best) BASIC9.08□□□□□ -0.964e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-202ENST00000393366 614 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.974e-7■■■□□ 17.2
SMNDC1O75940 ATP5G1-203ENST00000502964 679 ntTSL 29.01□□□□□ -0.974e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-215ENST00000488914 804 ntTSL 28.91□□□□□ -0.988e-11■■■□□ 17.2
SMNDC1O75940 HSP90AB2P-201ENST00000507090 2176 ntBASIC8.55□□□□□ -1.044e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-208ENST00000441708 608 ntTSL 48.3□□□□□ -1.088e-11■■■□□ 17.2
SMNDC1O75940 CDC6-202ENST00000473555 584 ntTSL 28.01□□□□□ -1.134e-7■■■□□ 17.2
SMNDC1O75940 PPP2R3C-211ENST00000555614 676 ntTSL 57.6□□□□□ -1.194e-7■■■□□ 17.2
SMNDC1O75940 PPP2R3C-214ENST00000555726 546 ntTSL 37.52□□□□□ -1.214e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-209ENST00000450969 645 ntTSL 47.27□□□□□ -1.258e-11■■■□□ 17.2
SMNDC1O75940 STAT2-202ENST00000418572 1548 ntTSL 2 BASIC7.21□□□□□ -1.264e-7■■■□□ 17.2
SMNDC1O75940 CTNNB1-205ENST00000426215 563 ntTSL 46.53□□□□□ -1.364e-7■■■□□ 17.2
SMNDC1O75940 STAT2-212ENST00000557417 1063 ntTSL 25.44□□□□□ -1.544e-7■■■□□ 17.2
SMNDC1O75940 FMO5-205ENST00000527849 2410 ntTSL 516.86■□□□□ 0.291e-6■■■□□ 17.2
SMNDC1O75940 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.261e-6■■■□□ 17.2
SMNDC1O75940 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.19■□□□□ 0.021e-6■■■□□ 17.2
SMNDC1O75940 FMO5-209ENST00000619062 1842 ntTSL 211.44□□□□□ -0.581e-6■■■□□ 17.2
SMNDC1O75940 FMO5-204ENST00000478432 1606 ntTSL 28.14□□□□□ -1.111e-6■■■□□ 17.2
SMNDC1O75940 FMO5-207ENST00000533848 618 ntTSL 47.71□□□□□ -1.181e-6■■■□□ 17.2
SMNDC1O75940 FMO5-202ENST00000369272 2168 ntTSL 1 (best) BASIC7.7□□□□□ -1.181e-6■■■□□ 17.2
SMNDC1O75940 FMO5-203ENST00000441068 1696 ntTSL 1 (best) BASIC7.62□□□□□ -1.191e-6■■■□□ 17.2
SMNDC1O75940 FMO5-206ENST00000533174 671 ntTSL 46.74□□□□□ -1.331e-6■■■□□ 17.2
SMNDC1O75940 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.538e-7■■■□□ 17.1
SMNDC1O75940 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.05■□□□□ 0.328e-7■■■□□ 17.1
SMNDC1O75940 UBE2I-208ENST00000473256 1771 ntTSL 216.23■□□□□ 0.193e-6■■■□□ 17.1
SMNDC1O75940 UBE2I-217ENST00000568209 266 ntTSL 515.29■□□□□ 0.043e-6■■■□□ 17.1
SMNDC1O75940 TCF3-208ENST00000586318 631 ntTSL 314.71□□□□□ -0.052e-6■■■□□ 17.1
SMNDC1O75940 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.651e-8■■■□□ 17.1
SMNDC1O75940 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.42■□□□□ 0.061e-8■■■□□ 17.1
SMNDC1O75940 DYNC1LI2-212ENST00000568180 573 ntTSL 515.29■□□□□ 0.041e-8■■■□□ 17.1
SMNDC1O75940 DYNC1LI2-210ENST00000566150 568 ntTSL 315.08■□□□□ 01e-8■■■□□ 17.1
SMNDC1O75940 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.7□□□□□ -0.061e-8■■■□□ 17.1
SMNDC1O75940 SREBF1-204ENST00000395756 3026 ntTSL 217.88■□□□□ 0.453e-8■■■□□ 17.1
SMNDC1O75940 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.432e-37■■■□□ 17.1
SMNDC1O75940 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.182e-37■■■□□ 17.1
SMNDC1O75940 ALDOA-217ENST00000566130 801 ntTSL 212.71□□□□□ -0.371e-10■■■□□ 17.1
SMNDC1O75940 ALDOA-218ENST00000566146 365 ntTSL 1 (best)8.27□□□□□ -1.091e-10■■■□□ 17.1
SMNDC1O75940 NCL-206ENST00000454824 606 ntTSL 36.2□□□□□ -1.426e-22■■■□□ 17
SMNDC1O75940 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.042e-8■■■□□ 17
SMNDC1O75940 RPS18-236ENST00000490191 996 ntTSL 214.43□□□□□ -0.17e-12■■■□□ 17
SMNDC1O75940 AC007389.1-202ENST00000377977 1266 ntTSL 2 BASIC10.61□□□□□ -0.712e-8■■■□□ 17
Retrieved 100 of 11,362 protein–RNA pairs in 244 ms