Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS4BO75351 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4BO75351 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4BO75351 AL049796.1-201ENST00000565336 1766 ntBASIC20.5■□□□□ 0.87
VPS4BO75351 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS4BO75351 AC027612.3-201ENST00000413684 1047 ntBASIC20.5■□□□□ 0.87
VPS4BO75351 AC010525.1-201ENST00000585559 441 ntBASIC20.5■□□□□ 0.87
VPS4BO75351 AP004607.7-201ENST00000527152 1677 ntBASIC20.5■□□□□ 0.87
VPS4BO75351 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4BO75351 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4BO75351 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4BO75351 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4BO75351 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS4BO75351 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS4BO75351 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS4BO75351 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS4BO75351 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS4BO75351 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.49■□□□□ 0.87
VPS4BO75351 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS4BO75351 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS4BO75351 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS4BO75351 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS4BO75351 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS4BO75351 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
VPS4BO75351 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
VPS4BO75351 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS4BO75351 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS4BO75351 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.48■□□□□ 0.87
VPS4BO75351 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
VPS4BO75351 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS4BO75351 AP005435.1-201ENST00000529293 1178 ntBASIC20.48■□□□□ 0.87
VPS4BO75351 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.48■□□□□ 0.87
VPS4BO75351 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS4BO75351 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS4BO75351 AC003102.1-202ENST00000563394 1796 ntBASIC20.48■□□□□ 0.87
VPS4BO75351 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
VPS4BO75351 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VPS4BO75351 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS4BO75351 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS4BO75351 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS4BO75351 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS4BO75351 HLA-L-209ENST00000420110 1011 ntBASIC20.47■□□□□ 0.87
VPS4BO75351 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.47■□□□□ 0.87
VPS4BO75351 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS4BO75351 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
VPS4BO75351 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS4BO75351 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS4BO75351 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS4BO75351 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS4BO75351 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS4BO75351 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS4BO75351 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS4BO75351 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS4BO75351 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS4BO75351 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS4BO75351 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS4BO75351 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS4BO75351 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
VPS4BO75351 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS4BO75351 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS4BO75351 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS4BO75351 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS4BO75351 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS4BO75351 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS4BO75351 NTF6G-201ENST00000591094 616 ntBASIC20.46■□□□□ 0.87
VPS4BO75351 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS4BO75351 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
VPS4BO75351 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS4BO75351 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS4BO75351 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS4BO75351 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.46■□□□□ 0.87
VPS4BO75351 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS4BO75351 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS4BO75351 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS4BO75351 SLC25A24-204ENST00000569674 2357 ntBASIC20.45■□□□□ 0.86
VPS4BO75351 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS4BO75351 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS4BO75351 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS4BO75351 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.45■□□□□ 0.86
VPS4BO75351 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
VPS4BO75351 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.45■□□□□ 0.86
VPS4BO75351 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS4BO75351 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
VPS4BO75351 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS4BO75351 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
VPS4BO75351 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS4BO75351 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS4BO75351 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS4BO75351 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
VPS4BO75351 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VPS4BO75351 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS4BO75351 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
VPS4BO75351 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
VPS4BO75351 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms