Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 KRT18P60-201ENST00000312876 1297 ntBASIC21.06■□□□□ 0.96
SHOX2O60902 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.06■□□□□ 0.96
SHOX2O60902 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.06■□□□□ 0.96
SHOX2O60902 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
SHOX2O60902 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
SHOX2O60902 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHOX2O60902 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.05■□□□□ 0.96
SHOX2O60902 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHOX2O60902 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SHOX2O60902 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHOX2O60902 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHOX2O60902 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHOX2O60902 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHOX2O60902 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHOX2O60902 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SHOX2O60902 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SHOX2O60902 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHOX2O60902 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SHOX2O60902 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.05■□□□□ 0.96
SHOX2O60902 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHOX2O60902 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHOX2O60902 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.04■□□□□ 0.96
SHOX2O60902 TCF3P1-201ENST00000423021 1937 ntBASIC21.04■□□□□ 0.96
SHOX2O60902 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SHOX2O60902 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.04■□□□□ 0.96
SHOX2O60902 HSD17B1P1-201ENST00000590052 955 ntBASIC21.04■□□□□ 0.96
SHOX2O60902 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHOX2O60902 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHOX2O60902 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.04■□□□□ 0.96
SHOX2O60902 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SHOX2O60902 OR7E47P-201ENST00000546390 1422 ntBASIC21.04■□□□□ 0.96
SHOX2O60902 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHOX2O60902 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.03■□□□□ 0.96
SHOX2O60902 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHOX2O60902 AC125437.2-201ENST00000625180 2167 ntBASIC21.03■□□□□ 0.96
SHOX2O60902 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHOX2O60902 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.03■□□□□ 0.96
SHOX2O60902 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHOX2O60902 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHOX2O60902 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.03■□□□□ 0.96
SHOX2O60902 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.03■□□□□ 0.96
SHOX2O60902 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.03■□□□□ 0.96
SHOX2O60902 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHOX2O60902 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.03■□□□□ 0.96
SHOX2O60902 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.03■□□□□ 0.96
SHOX2O60902 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHOX2O60902 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHOX2O60902 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.03■□□□□ 0.96
SHOX2O60902 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SHOX2O60902 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
SHOX2O60902 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
SHOX2O60902 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SHOX2O60902 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.02■□□□□ 0.96
SHOX2O60902 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.02■□□□□ 0.96
SHOX2O60902 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 DUX4L18-201ENST00000553347 1267 ntBASIC21.02■□□□□ 0.96
SHOX2O60902 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHOX2O60902 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SHOX2O60902 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SHOX2O60902 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHOX2O60902 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.01■□□□□ 0.95
SHOX2O60902 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHOX2O60902 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHOX2O60902 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHOX2O60902 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHOX2O60902 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.01■□□□□ 0.95
SHOX2O60902 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHOX2O60902 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHOX2O60902 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SHOX2O60902 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHOX2O60902 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHOX2O60902 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SHOX2O60902 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHOX2O60902 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SHOX2O60902 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SHOX2O60902 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHOX2O60902 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHOX2O60902 AC120024.1-201ENST00000562672 995 ntBASIC21■□□□□ 0.95
SHOX2O60902 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SHOX2O60902 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SHOX2O60902 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SHOX2O60902 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms