Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 IST1-208ENST00000535424 4082 ntTSL 5 BASIC7.98□□□□□ -1.139e-6■□□□□ 9.1
CDC40O60508 IST1-220ENST00000541918 908 ntTSL 57.71□□□□□ -1.189e-6■□□□□ 9.1
CDC40O60508 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC7.39□□□□□ -1.239e-6■□□□□ 9.1
CDC40O60508 RPS17-206ENST00000560612 1877 ntTSL 27.18□□□□□ -1.269e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC6.8□□□□□ -1.329e-6■□□□□ 9.1
CDC40O60508 ADGRD1-212ENST00000542091 735 ntTSL 36.78□□□□□ -1.329e-6■□□□□ 9.1
CDC40O60508 HAL-205ENST00000546579 697 ntTSL 46.45□□□□□ -1.389e-6■□□□□ 9.1
CDC40O60508 IST1-210ENST00000537571 603 ntTSL 25.06□□□□□ -1.69e-6■□□□□ 9.1
CDC40O60508 RPS17-208ENST00000561068 522 ntTSL 34.34□□□□□ -1.719e-6■□□□□ 9.1
CDC40O60508 RPS17-207ENST00000560639 932 ntTSL 54.22□□□□□ -1.739e-6■□□□□ 9.1
CDC40O60508 RPS17-202ENST00000558397 583 ntTSL 34.2□□□□□ -1.749e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-208ENST00000493008 2334 ntTSL 23.71□□□□□ -1.829e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.34□□□□□ -1.889e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-207ENST00000492028 3227 ntTSL 1 (best)3.21□□□□□ -1.99e-6■□□□□ 9.1
CDC40O60508 HNRNPU-210ENST00000483966 1069 ntTSL 23.14□□□□□ -1.919e-6■□□□□ 9.1
CDC40O60508 MAP4-214ENST00000482752 386 ntTSL 31.63□□□□□ -2.159e-6■□□□□ 9.1
CDC40O60508 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.71□□□□□ -2.39e-6■□□□□ 9.1
CDC40O60508 EIF4G1-232ENST00000466311 573 ntTSL 213.77□□□□□ -0.213e-8■□□□□ 9.1
CDC40O60508 EIF4G1-225ENST00000448284 677 ntTSL 512.39□□□□□ -0.433e-8■□□□□ 9.1
CDC40O60508 RAB17-208ENST00000430445 421 ntTSL 512.89□□□□□ -0.354e-10■□□□□ 9.1
CDC40O60508 AC124312.1-202ENST00000557230 669 ntAPPRIS ALT2 TSL 56.61□□□□□ -1.351e-8■□□□□ 9.1
CDC40O60508 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.89□□□□□ -1.471e-8■□□□□ 9.1
CDC40O60508 SNHG14-214ENST00000551361 550 ntTSL 32.43□□□□□ -2.021e-8■□□□□ 9.1
CDC40O60508 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.22□□□□□ -2.051e-8■□□□□ 9.1
CDC40O60508 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.156e-21■□□□□ 9.1
CDC40O60508 NAP1L4-207ENST00000469805 2294 ntTSL 314.85□□□□□ -0.038e-9■□□□□ 9.1
CDC40O60508 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.542e-7■□□□□ 9
CDC40O60508 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.52e-7■□□□□ 9
CDC40O60508 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.352e-7■□□□□ 9
CDC40O60508 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.06■□□□□ 0.322e-7■□□□□ 9
CDC40O60508 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.232e-7■□□□□ 9
CDC40O60508 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.88■□□□□ 0.132e-7■□□□□ 9
CDC40O60508 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.082e-7■□□□□ 9
CDC40O60508 SFT2D1-202ENST00000478705 659 ntTSL 215.3■□□□□ 0.042e-7■□□□□ 9
CDC40O60508 NDRG2-244ENST00000555650 1588 ntTSL 215.09■□□□□ 0.012e-7■□□□□ 9
CDC40O60508 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.032e-7■□□□□ 9
CDC40O60508 SNX5-204ENST00000431277 840 ntTSL 514.77□□□□□ -0.052e-7■□□□□ 9
CDC40O60508 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.052e-7■□□□□ 9
CDC40O60508 NDRG2-271ENST00000557353 1919 ntTSL 214.55□□□□□ -0.082e-7■□□□□ 9
CDC40O60508 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.51□□□□□ -0.092e-7■□□□□ 9
CDC40O60508 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.112e-12■□□□□ 9
CDC40O60508 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.37□□□□□ -0.112e-7■□□□□ 9
CDC40O60508 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.18□□□□□ -0.142e-7■□□□□ 9
CDC40O60508 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.152e-7■□□□□ 9
CDC40O60508 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.152e-7■□□□□ 9
CDC40O60508 SNX5-203ENST00000419004 778 ntTSL 513.82□□□□□ -0.22e-7■□□□□ 9
CDC40O60508 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.75□□□□□ -0.212e-7■□□□□ 9
CDC40O60508 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.312e-7■□□□□ 9
CDC40O60508 SAR1A-203ENST00000373239 468 ntTSL 312.97□□□□□ -0.332e-7■□□□□ 9
CDC40O60508 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.63□□□□□ -0.392e-7■□□□□ 9
CDC40O60508 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC12.32□□□□□ -0.442e-7■□□□□ 9
CDC40O60508 NDRG2-258ENST00000556716 2718 ntTSL 212.17□□□□□ -0.462e-7■□□□□ 9
CDC40O60508 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.472e-7■□□□□ 9
CDC40O60508 SFT2D1-204ENST00000487841 2576 ntTSL 1 (best)11.63□□□□□ -0.552e-7■□□□□ 9
CDC40O60508 HMGB2-205ENST00000511316 1841 ntTSL 211.61□□□□□ -0.552e-12■□□□□ 9
CDC40O60508 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.632e-12■□□□□ 9
CDC40O60508 NDRG2-274ENST00000557633 527 ntTSL 310.73□□□□□ -0.692e-7■□□□□ 9
CDC40O60508 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC9.43□□□□□ -0.92e-7■□□□□ 9
CDC40O60508 DDX5-214ENST00000580026 1171 ntTSL 29.34□□□□□ -0.912e-7■□□□□ 9
CDC40O60508 DDX5-209ENST00000578758 667 ntTSL 29.11□□□□□ -0.952e-7■□□□□ 9
CDC40O60508 ENSA-209ENST00000369016 923 ntTSL 5 BASIC8.03□□□□□ -1.122e-7■□□□□ 9
CDC40O60508 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.162e-7■□□□□ 9
CDC40O60508 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.32e-12■□□□□ 9
CDC40O60508 SNX5-211ENST00000483485 3087 ntTSL 26.77□□□□□ -1.332e-7■□□□□ 9
CDC40O60508 DDX5-216ENST00000581237 592 ntTSL 56.69□□□□□ -1.342e-7■□□□□ 9
CDC40O60508 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.342e-7■□□□□ 9
CDC40O60508 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.71□□□□□ -1.662e-7■□□□□ 9
CDC40O60508 SAR1A-208ENST00000477464 529 ntTSL 23.8□□□□□ -1.82e-7■□□□□ 9
CDC40O60508 SNX5-205ENST00000463050 845 ntTSL 21.98□□□□□ -2.092e-7■□□□□ 9
CDC40O60508 SNX5-209ENST00000476648 950 ntTSL 31.67□□□□□ -2.142e-7■□□□□ 9
CDC40O60508 DHRS2-203ENST00000432832 834 ntTSL 218.6■□□□□ 0.576e-15■□□□□ 9
CDC40O60508 DHRS2-205ENST00000553896 1352 ntTSL 1 (best)18.41■□□□□ 0.546e-15■□□□□ 9
CDC40O60508 HNRNPU-217ENST00000638952 5678 ntTSL 517.48■□□□□ 0.392e-6■□□□□ 9
CDC40O60508 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.142e-6■□□□□ 9
CDC40O60508 HNRNPU-209ENST00000476241 4844 ntTSL 515.25■□□□□ 0.032e-6■□□□□ 9
CDC40O60508 HNRNPU-228ENST00000640306 2917 ntTSL 514.91□□□□□ -0.022e-6■□□□□ 9
CDC40O60508 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.142e-6■□□□□ 9
CDC40O60508 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.22e-6■□□□□ 9
CDC40O60508 HNRNPU-214ENST00000638475 2698 ntTSL 513.41□□□□□ -0.262e-6■□□□□ 9
CDC40O60508 HNRNPU-224ENST00000640056 2045 ntTSL 59.05□□□□□ -0.962e-6■□□□□ 9
CDC40O60508 RNU6-45P-201ENST00000384471 107 ntBASIC1.5□□□□□ -2.174e-8■□□□□ 9
CDC40O60508 TMEM214-213ENST00000495312 804 ntTSL 225.44■■□□□ 1.666e-7■□□□□ 9
CDC40O60508 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.696e-7■□□□□ 9
CDC40O60508 TMEM214-202ENST00000321326 2700 ntTSL 218.34■□□□□ 0.536e-7■□□□□ 9
CDC40O60508 CCDC142-203ENST00000454193 2309 ntTSL 217.58■□□□□ 0.46e-7■□□□□ 9
CDC40O60508 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.4■□□□□ 0.386e-7■□□□□ 9
CDC40O60508 CCDC142-204ENST00000471713 1035 ntTSL 516.87■□□□□ 0.296e-7■□□□□ 9
CDC40O60508 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.26e-7■□□□□ 9
CDC40O60508 SPTAN1-217ENST00000629089 1546 ntTSL 216.08■□□□□ 0.166e-7■□□□□ 9
CDC40O60508 SPTAN1-214ENST00000628614 993 ntTSL 1 (best)15.91■□□□□ 0.146e-7■□□□□ 9
CDC40O60508 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.56■□□□□ 0.086e-7■□□□□ 9
CDC40O60508 STAG3L5P-PVRIG2P-PILRB-203ENST00000470714 868 ntTSL 315.32■□□□□ 0.046e-7■□□□□ 9
CDC40O60508 CCDC142-205ENST00000472962 645 ntTSL 314.71□□□□□ -0.056e-7■□□□□ 9
CDC40O60508 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.96□□□□□ -0.176e-7■□□□□ 9
CDC40O60508 SEPT9-224ENST00000589246 594 ntTSL 213.77□□□□□ -0.216e-7■□□□□ 9
CDC40O60508 STAG3L5P-PVRIG2P-PILRB-202ENST00000444874 2661 ntTSL 212.89□□□□□ -0.356e-7■□□□□ 9
CDC40O60508 CCDC142-207ENST00000474681 735 ntTSL 512.63□□□□□ -0.396e-7■□□□□ 9
CDC40O60508 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.426e-7■□□□□ 9
CDC40O60508 HECTD1-213ENST00000556224 3267 ntTSL 512.24□□□□□ -0.456e-7■□□□□ 9
CDC40O60508 STAG3L5P-PVRIG2P-PILRB-205ENST00000483329 819 ntTSL 511.24□□□□□ -0.616e-7■□□□□ 9
Retrieved 100 of 5,364 protein–RNA pairs in 30.1 ms