Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.54■□□□□ 0.72
PRKNO60260 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.54■□□□□ 0.72
PRKNO60260 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.54■□□□□ 0.72
PRKNO60260 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.54■□□□□ 0.72
PRKNO60260 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
PRKNO60260 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRKNO60260 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
PRKNO60260 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRKNO60260 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
PRKNO60260 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRKNO60260 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PRKNO60260 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.53■□□□□ 0.72
PRKNO60260 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.53■□□□□ 0.72
PRKNO60260 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.53■□□□□ 0.72
PRKNO60260 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PRKNO60260 RAP2CP1-201ENST00000605103 478 ntBASIC19.53■□□□□ 0.72
PRKNO60260 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PRKNO60260 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRKNO60260 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRKNO60260 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PRKNO60260 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.52■□□□□ 0.72
PRKNO60260 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.52■□□□□ 0.72
PRKNO60260 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PRKNO60260 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.52■□□□□ 0.72
PRKNO60260 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.52■□□□□ 0.72
PRKNO60260 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.52■□□□□ 0.72
PRKNO60260 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.52■□□□□ 0.72
PRKNO60260 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
PRKNO60260 KRT18P20-201ENST00000548986 1279 ntBASIC19.52■□□□□ 0.72
PRKNO60260 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.52■□□□□ 0.72
PRKNO60260 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PRKNO60260 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PRKNO60260 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.52■□□□□ 0.72
PRKNO60260 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PRKNO60260 AC007375.3-201ENST00000600936 2314 ntBASIC19.52■□□□□ 0.71
PRKNO60260 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PRKNO60260 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.52■□□□□ 0.71
PRKNO60260 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.52■□□□□ 0.71
PRKNO60260 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
PRKNO60260 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PRKNO60260 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.51■□□□□ 0.71
PRKNO60260 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.51■□□□□ 0.71
PRKNO60260 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.51■□□□□ 0.71
PRKNO60260 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.51■□□□□ 0.71
PRKNO60260 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.51■□□□□ 0.71
PRKNO60260 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
PRKNO60260 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.51■□□□□ 0.71
PRKNO60260 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
PRKNO60260 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PRKNO60260 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
PRKNO60260 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
PRKNO60260 DUX4L16-201ENST00000555130 1264 ntBASIC19.5■□□□□ 0.71
PRKNO60260 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.5■□□□□ 0.71
PRKNO60260 AC008175.2-201ENST00000612840 297 ntBASIC19.5■□□□□ 0.71
PRKNO60260 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKNO60260 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.49■□□□□ 0.71
PRKNO60260 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.49■□□□□ 0.71
PRKNO60260 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.49■□□□□ 0.71
PRKNO60260 AF106564.1-201ENST00000607058 2553 ntBASIC19.49■□□□□ 0.71
PRKNO60260 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.49■□□□□ 0.71
PRKNO60260 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.49■□□□□ 0.71
PRKNO60260 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.49■□□□□ 0.71
PRKNO60260 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.49■□□□□ 0.71
PRKNO60260 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 Z98882.1-201ENST00000622160 2253 ntBASIC19.49■□□□□ 0.71
PRKNO60260 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKNO60260 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms