Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AC133637.1-201ENST00000624115 1537 ntBASIC18.88■□□□□ 0.61
SSX4O60224 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSX4O60224 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX4O60224 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.88■□□□□ 0.61
SSX4O60224 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SSX4O60224 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.88■□□□□ 0.61
SSX4O60224 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.88■□□□□ 0.61
SSX4O60224 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX4O60224 AL353803.4-201ENST00000565882 1934 ntBASIC18.88■□□□□ 0.61
SSX4O60224 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX4O60224 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX4O60224 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.88■□□□□ 0.61
SSX4O60224 AFG3L1P-217ENST00000557444 2447 ntBASIC18.88■□□□□ 0.61
SSX4O60224 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.88■□□□□ 0.61
SSX4O60224 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSX4O60224 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SSX4O60224 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SSX4O60224 YBX1P1-201ENST00000445822 960 ntBASIC18.87■□□□□ 0.61
SSX4O60224 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
SSX4O60224 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.87■□□□□ 0.61
SSX4O60224 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX4O60224 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SSX4O60224 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SSX4O60224 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.86■□□□□ 0.61
SSX4O60224 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.86■□□□□ 0.61
SSX4O60224 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 IGHV3-19-201ENST00000521488 291 ntBASIC18.86■□□□□ 0.61
SSX4O60224 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.86■□□□□ 0.61
SSX4O60224 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SSX4O60224 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX4O60224 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.86■□□□□ 0.61
SSX4O60224 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.85■□□□□ 0.61
SSX4O60224 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.85■□□□□ 0.61
SSX4O60224 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
SSX4O60224 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.85■□□□□ 0.61
SSX4O60224 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.85■□□□□ 0.61
SSX4O60224 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.85■□□□□ 0.61
SSX4O60224 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
SSX4O60224 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.85■□□□□ 0.61
SSX4O60224 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SSX4O60224 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.85■□□□□ 0.61
SSX4O60224 AL358852.1-201ENST00000623174 1268 ntBASIC18.85■□□□□ 0.61
SSX4O60224 AL031602.1-201ENST00000633169 911 ntBASIC18.85■□□□□ 0.61
SSX4O60224 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.85■□□□□ 0.61
SSX4O60224 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 PCDHAC2-203ENST00000615316 3011 ntBASIC18.85■□□□□ 0.61
SSX4O60224 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.85■□□□□ 0.61
SSX4O60224 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SSX4O60224 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SSX4O60224 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.85■□□□□ 0.61
SSX4O60224 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX4O60224 FEM1AP1-201ENST00000431297 1995 ntBASIC18.84■□□□□ 0.61
SSX4O60224 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SSX4O60224 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.84■□□□□ 0.61
SSX4O60224 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX4O60224 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.84■□□□□ 0.61
SSX4O60224 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SSX4O60224 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SSX4O60224 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.84■□□□□ 0.61
SSX4O60224 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.84■□□□□ 0.61
SSX4O60224 MIR6084-201ENST00000622012 110 ntBASIC18.84■□□□□ 0.61
SSX4O60224 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.84■□□□□ 0.61
SSX4O60224 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.84■□□□□ 0.61
SSX4O60224 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
SSX4O60224 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.84■□□□□ 0.61
SSX4O60224 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX4O60224 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX4O60224 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SSX4O60224 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX4O60224 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms