Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.11■□□□□ 0.81
CACNA1AO00555 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1AO00555 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1AO00555 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.11■□□□□ 0.81
CACNA1AO00555 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.11■□□□□ 0.81
CACNA1AO00555 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1AO00555 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.11■□□□□ 0.81
CACNA1AO00555 MYC-208ENST00000641036 567 ntBASIC20.11■□□□□ 0.81
CACNA1AO00555 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1AO00555 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1AO00555 LINC01568-207ENST00000641790 1380 ntBASIC20.11■□□□□ 0.81
CACNA1AO00555 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CACNA1AO00555 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.1■□□□□ 0.81
CACNA1AO00555 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CACNA1AO00555 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.1■□□□□ 0.81
CACNA1AO00555 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.1■□□□□ 0.81
CACNA1AO00555 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
CACNA1AO00555 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CACNA1AO00555 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CACNA1AO00555 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CACNA1AO00555 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CACNA1AO00555 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CACNA1AO00555 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CACNA1AO00555 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CACNA1AO00555 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.09■□□□□ 0.81
CACNA1AO00555 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CACNA1AO00555 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CACNA1AO00555 RBM17P1-201ENST00000453646 1190 ntBASIC20.09■□□□□ 0.81
CACNA1AO00555 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CACNA1AO00555 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CACNA1AO00555 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CACNA1AO00555 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CACNA1AO00555 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.08■□□□□ 0.81
CACNA1AO00555 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CACNA1AO00555 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CACNA1AO00555 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CACNA1AO00555 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CACNA1AO00555 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
CACNA1AO00555 AC120498.10-201ENST00000621827 505 ntBASIC20.08■□□□□ 0.81
CACNA1AO00555 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CACNA1AO00555 AC135731.1-201ENST00000569415 2548 ntBASIC20.08■□□□□ 0.8
CACNA1AO00555 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1AO00555 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.08■□□□□ 0.8
CACNA1AO00555 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1AO00555 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.08■□□□□ 0.8
CACNA1AO00555 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CACNA1AO00555 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.08■□□□□ 0.8
CACNA1AO00555 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.08■□□□□ 0.8
CACNA1AO00555 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
CACNA1AO00555 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.07■□□□□ 0.8
CACNA1AO00555 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.07■□□□□ 0.8
CACNA1AO00555 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1AO00555 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.07■□□□□ 0.8
CACNA1AO00555 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.07■□□□□ 0.8
CACNA1AO00555 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1AO00555 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
CACNA1AO00555 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1AO00555 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1AO00555 DUSP8P3-201ENST00000399571 1760 ntBASIC20.07■□□□□ 0.8
CACNA1AO00555 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1AO00555 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CACNA1AO00555 AC104076.2-201ENST00000448912 469 ntBASIC20.07■□□□□ 0.8
CACNA1AO00555 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.07■□□□□ 0.8
CACNA1AO00555 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.07■□□□□ 0.8
CACNA1AO00555 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.07■□□□□ 0.8
CACNA1AO00555 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1AO00555 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CACNA1AO00555 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.06■□□□□ 0.8
CACNA1AO00555 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1AO00555 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
CACNA1AO00555 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CACNA1AO00555 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.06■□□□□ 0.8
CACNA1AO00555 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1AO00555 AC053503.5-201ENST00000601508 636 ntBASIC20.06■□□□□ 0.8
CACNA1AO00555 AC110285.5-201ENST00000611501 352 ntBASIC20.06■□□□□ 0.8
CACNA1AO00555 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CACNA1AO00555 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1AO00555 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.06■□□□□ 0.8
CACNA1AO00555 AL031963.3-201ENST00000606441 850 ntBASIC20.06■□□□□ 0.8
CACNA1AO00555 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1AO00555 AL137013.1-201ENST00000432946 1228 ntBASIC20.05■□□□□ 0.8
CACNA1AO00555 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.05■□□□□ 0.8
CACNA1AO00555 KRT18P16-201ENST00000510337 1294 ntBASIC20.05■□□□□ 0.8
CACNA1AO00555 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1AO00555 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CACNA1AO00555 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.05■□□□□ 0.8
CACNA1AO00555 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1AO00555 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1AO00555 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms