Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV40A0A0B4J280 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 AC016405.3-201ENST00000607710 860 ntBASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 RBM17P2-201ENST00000616397 1405 ntBASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 MKRN4P-201ENST00000444706 1521 ntBASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 CLDN5-201ENST00000403084 2357 ntBASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV40A0A0B4J280 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV40A0A0B4J280 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV40A0A0B4J280 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV40A0A0B4J280 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.08■□□□□ 0.33
TRAV40A0A0B4J280 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
TRAV40A0A0B4J280 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV40A0A0B4J280 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 AC069152.1-201ENST00000438030 544 ntBASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 CD99P1-205ENST00000527459 561 ntBASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 AC098934.4-201ENST00000564127 592 ntBASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 OR10C1-204ENST00000622521 1039 ntBASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV40A0A0B4J280 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 AC093787.1-201ENST00000450396 207 ntBASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms