Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
VTA1Q9NP79 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
VTA1Q9NP79 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
VTA1Q9NP79 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
VTA1Q9NP79 AC108673.1-201ENST00000510422 1159 ntBASIC30.41■■■□□ 2.46
VTA1Q9NP79 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
VTA1Q9NP79 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
VTA1Q9NP79 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.4■■■□□ 2.46
VTA1Q9NP79 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.4■■■□□ 2.46
VTA1Q9NP79 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
VTA1Q9NP79 AC021231.2-201ENST00000594613 730 ntBASIC30.4■■■□□ 2.46
VTA1Q9NP79 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
VTA1Q9NP79 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
VTA1Q9NP79 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
VTA1Q9NP79 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
VTA1Q9NP79 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
VTA1Q9NP79 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
VTA1Q9NP79 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.35■■■□□ 2.45
VTA1Q9NP79 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.35■■■□□ 2.45
VTA1Q9NP79 MIR6090-201ENST00000622481 60 ntBASIC30.35■■■□□ 2.45
VTA1Q9NP79 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
VTA1Q9NP79 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
VTA1Q9NP79 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
VTA1Q9NP79 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
VTA1Q9NP79 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
VTA1Q9NP79 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
VTA1Q9NP79 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.33■■■□□ 2.45
VTA1Q9NP79 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
VTA1Q9NP79 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.32■■■□□ 2.44
VTA1Q9NP79 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.31■■■□□ 2.44
VTA1Q9NP79 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
VTA1Q9NP79 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
VTA1Q9NP79 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
VTA1Q9NP79 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
VTA1Q9NP79 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
VTA1Q9NP79 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
VTA1Q9NP79 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
VTA1Q9NP79 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
VTA1Q9NP79 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.28■■■□□ 2.44
VTA1Q9NP79 AC120057.4-201ENST00000624722 1615 ntBASIC30.27■■■□□ 2.44
VTA1Q9NP79 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.24■■■□□ 2.43
VTA1Q9NP79 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
VTA1Q9NP79 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
VTA1Q9NP79 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.43
VTA1Q9NP79 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.2■■■□□ 2.43
VTA1Q9NP79 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.42
VTA1Q9NP79 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
VTA1Q9NP79 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
VTA1Q9NP79 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.18■■■□□ 2.42
VTA1Q9NP79 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
VTA1Q9NP79 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.16■■■□□ 2.42
VTA1Q9NP79 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.16■■■□□ 2.42
VTA1Q9NP79 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.16■■■□□ 2.42
VTA1Q9NP79 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.16■■■□□ 2.42
VTA1Q9NP79 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
VTA1Q9NP79 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
VTA1Q9NP79 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.13■■■□□ 2.41
VTA1Q9NP79 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.13■■■□□ 2.41
VTA1Q9NP79 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.12■■■□□ 2.41
VTA1Q9NP79 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.12■■■□□ 2.41
VTA1Q9NP79 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
VTA1Q9NP79 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
VTA1Q9NP79 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.11■■■□□ 2.41
VTA1Q9NP79 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.11■■■□□ 2.41
VTA1Q9NP79 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
VTA1Q9NP79 LINC01971-201ENST00000617888 1048 ntBASIC30.1■■■□□ 2.41
VTA1Q9NP79 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
VTA1Q9NP79 MIR639-201ENST00000384974 98 ntBASIC30.09■■■□□ 2.41
VTA1Q9NP79 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
VTA1Q9NP79 MIR4449-201ENST00000578365 66 ntBASIC30.07■■■□□ 2.4
VTA1Q9NP79 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
VTA1Q9NP79 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
VTA1Q9NP79 MIR3648-2-201ENST00000581792 180 ntBASIC30.06■■■□□ 2.4
VTA1Q9NP79 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.06■■■□□ 2.4
VTA1Q9NP79 MIR3648-1-201ENST00000615959 180 ntBASIC30.06■■■□□ 2.4
VTA1Q9NP79 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
VTA1Q9NP79 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
VTA1Q9NP79 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.05■■■□□ 2.4
VTA1Q9NP79 DUX4L11-201ENST00000611504 1267 ntBASIC30.05■■■□□ 2.4
VTA1Q9NP79 DUX4L12-201ENST00000614593 1267 ntBASIC30.05■■■□□ 2.4
VTA1Q9NP79 DUX4L14-201ENST00000621227 1267 ntBASIC30.05■■■□□ 2.4
VTA1Q9NP79 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
VTA1Q9NP79 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.04■■■□□ 2.4
VTA1Q9NP79 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.04■■■□□ 2.4
VTA1Q9NP79 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
VTA1Q9NP79 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.03■■■□□ 2.4
VTA1Q9NP79 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.03■■■□□ 2.4
VTA1Q9NP79 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.01■■■□□ 2.4
VTA1Q9NP79 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.4
VTA1Q9NP79 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.01■■■□□ 2.39
VTA1Q9NP79 AC016575.1-201ENST00000607026 382 ntBASIC30.01■■■□□ 2.39
VTA1Q9NP79 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30■■■□□ 2.39
VTA1Q9NP79 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
VTA1Q9NP79 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC29.99■■■□□ 2.39
VTA1Q9NP79 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
VTA1Q9NP79 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
VTA1Q9NP79 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
VTA1Q9NP79 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.97■■■□□ 2.39
VTA1Q9NP79 CR559946.2-201ENST00000623684 991 ntBASIC29.97■■■□□ 2.39
VTA1Q9NP79 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms