Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CR559946.2-201ENST00000623684 991 ntBASIC25.67■■□□□ 1.7
COL28A1Q2UY09 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL28A1Q2UY09 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.66■■□□□ 1.7
COL28A1Q2UY09 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.66■■□□□ 1.7
COL28A1Q2UY09 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL28A1Q2UY09 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.66■■□□□ 1.7
COL28A1Q2UY09 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL28A1Q2UY09 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL28A1Q2UY09 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.64■■□□□ 1.7
COL28A1Q2UY09 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL28A1Q2UY09 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL28A1Q2UY09 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC25.62■■□□□ 1.69
COL28A1Q2UY09 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.62■■□□□ 1.69
COL28A1Q2UY09 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL28A1Q2UY09 DUX4L11-201ENST00000611504 1267 ntBASIC25.61■■□□□ 1.69
COL28A1Q2UY09 DUX4L12-201ENST00000614593 1267 ntBASIC25.61■■□□□ 1.69
COL28A1Q2UY09 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL28A1Q2UY09 DUX4L14-201ENST00000621227 1267 ntBASIC25.61■■□□□ 1.69
COL28A1Q2UY09 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL28A1Q2UY09 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL28A1Q2UY09 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
COL28A1Q2UY09 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL28A1Q2UY09 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL28A1Q2UY09 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL28A1Q2UY09 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL28A1Q2UY09 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL28A1Q2UY09 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL28A1Q2UY09 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL28A1Q2UY09 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL28A1Q2UY09 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC25.55■■□□□ 1.68
COL28A1Q2UY09 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.55■■□□□ 1.68
COL28A1Q2UY09 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.54■■□□□ 1.68
COL28A1Q2UY09 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
COL28A1Q2UY09 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL28A1Q2UY09 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC25.54■■□□□ 1.68
COL28A1Q2UY09 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.54■■□□□ 1.68
COL28A1Q2UY09 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL28A1Q2UY09 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL28A1Q2UY09 LINC01971-201ENST00000617888 1048 ntBASIC25.52■■□□□ 1.68
COL28A1Q2UY09 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.52■■□□□ 1.68
COL28A1Q2UY09 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.51■■□□□ 1.67
COL28A1Q2UY09 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
COL28A1Q2UY09 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL28A1Q2UY09 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC25.5■■□□□ 1.67
COL28A1Q2UY09 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.49■■□□□ 1.67
COL28A1Q2UY09 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
COL28A1Q2UY09 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
COL28A1Q2UY09 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.49■■□□□ 1.67
COL28A1Q2UY09 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL28A1Q2UY09 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL28A1Q2UY09 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.48■■□□□ 1.67
COL28A1Q2UY09 ABHD17AP5-201ENST00000580133 923 ntBASIC25.48■■□□□ 1.67
COL28A1Q2UY09 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL28A1Q2UY09 ST7-202ENST00000323984 2142 ntTSL 5 BASIC25.47■■□□□ 1.67
COL28A1Q2UY09 ST7-207ENST00000393449 2127 ntTSL 5 BASIC25.47■■□□□ 1.67
COL28A1Q2UY09 RARRES2P2-201ENST00000394842 485 ntBASIC25.46■■□□□ 1.67
COL28A1Q2UY09 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
COL28A1Q2UY09 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.46■■□□□ 1.67
COL28A1Q2UY09 WASH5P-204ENST00000632292 975 ntBASIC25.46■■□□□ 1.67
COL28A1Q2UY09 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL28A1Q2UY09 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL28A1Q2UY09 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
COL28A1Q2UY09 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.45■■□□□ 1.66
COL28A1Q2UY09 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.45■■□□□ 1.66
COL28A1Q2UY09 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
COL28A1Q2UY09 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
COL28A1Q2UY09 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
COL28A1Q2UY09 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
COL28A1Q2UY09 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
COL28A1Q2UY09 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
COL28A1Q2UY09 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
COL28A1Q2UY09 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.41■■□□□ 1.66
COL28A1Q2UY09 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL28A1Q2UY09 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC25.4■■□□□ 1.66
COL28A1Q2UY09 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC25.4■■□□□ 1.66
COL28A1Q2UY09 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.4■■□□□ 1.66
COL28A1Q2UY09 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC25.4■■□□□ 1.66
COL28A1Q2UY09 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.39■■□□□ 1.66
COL28A1Q2UY09 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
COL28A1Q2UY09 MIR6090-201ENST00000622481 60 ntBASIC25.38■■□□□ 1.65
COL28A1Q2UY09 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL28A1Q2UY09 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
COL28A1Q2UY09 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL28A1Q2UY09 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
COL28A1Q2UY09 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC25.37■■□□□ 1.65
COL28A1Q2UY09 AC108673.1-201ENST00000510422 1159 ntBASIC25.37■■□□□ 1.65
COL28A1Q2UY09 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL28A1Q2UY09 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.35■■□□□ 1.65
COL28A1Q2UY09 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
COL28A1Q2UY09 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL28A1Q2UY09 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL28A1Q2UY09 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL28A1Q2UY09 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.33■■□□□ 1.65
COL28A1Q2UY09 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.32■■□□□ 1.64
COL28A1Q2UY09 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL28A1Q2UY09 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.31■■□□□ 1.64
COL28A1Q2UY09 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL28A1Q2UY09 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL28A1Q2UY09 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL28A1Q2UY09 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 9.4 ms