Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Col1a1P11087 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Col1a1P11087 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Col1a1P11087 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Col1a1P11087 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC30.23■■■□□ 2.43
Col1a1P11087 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
Col1a1P11087 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC30.22■■■□□ 2.43
Col1a1P11087 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Col1a1P11087 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Col1a1P11087 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
Col1a1P11087 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Col1a1P11087 Gm7432-201ENSMUST00000210343 879 ntBASIC30.19■■■□□ 2.42
Col1a1P11087 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC30.18■■■□□ 2.42
Col1a1P11087 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
Col1a1P11087 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Col1a1P11087 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
Col1a1P11087 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Col1a1P11087 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Col1a1P11087 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
Col1a1P11087 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
Col1a1P11087 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
Col1a1P11087 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC30.13■■■□□ 2.41
Col1a1P11087 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col1a1P11087 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Col1a1P11087 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col1a1P11087 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Col1a1P11087 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
Col1a1P11087 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
Col1a1P11087 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Col1a1P11087 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Col1a1P11087 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Col1a1P11087 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC30.06■■■□□ 2.4
Col1a1P11087 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Col1a1P11087 Gm30346-201ENSMUST00000218641 1699 ntBASIC30.04■■■□□ 2.4
Col1a1P11087 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Col1a1P11087 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Col1a1P11087 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Col1a1P11087 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Col1a1P11087 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Col1a1P11087 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Col1a1P11087 Gm11599-201ENSMUST00000118720 878 ntBASIC29.99■■■□□ 2.39
Col1a1P11087 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
Col1a1P11087 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC29.99■■■□□ 2.39
Col1a1P11087 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC29.98■■■□□ 2.39
Col1a1P11087 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC29.97■■■□□ 2.39
Col1a1P11087 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
Col1a1P11087 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
Col1a1P11087 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
Col1a1P11087 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC29.94■■■□□ 2.38
Col1a1P11087 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Col1a1P11087 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
Col1a1P11087 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Col1a1P11087 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC29.92■■■□□ 2.38
Col1a1P11087 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC29.9■■■□□ 2.38
Col1a1P11087 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Col1a1P11087 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
Col1a1P11087 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC29.9■■■□□ 2.38
Col1a1P11087 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
Col1a1P11087 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC29.89■■■□□ 2.38
Col1a1P11087 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
Col1a1P11087 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC29.88■■■□□ 2.37
Col1a1P11087 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC29.87■■■□□ 2.37
Col1a1P11087 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC29.87■■■□□ 2.37
Col1a1P11087 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
Col1a1P11087 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC29.85■■■□□ 2.37
Col1a1P11087 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Col1a1P11087 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC29.82■■■□□ 2.36
Col1a1P11087 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Col1a1P11087 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
Col1a1P11087 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
Col1a1P11087 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
Col1a1P11087 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Col1a1P11087 Mir6538-201ENSMUST00000183713 110 ntBASIC29.8■■■□□ 2.36
Col1a1P11087 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
Col1a1P11087 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
Col1a1P11087 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
Col1a1P11087 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Col1a1P11087 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
Col1a1P11087 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
Col1a1P11087 Gm2415-204ENSMUST00000190235 2004 ntBASIC29.74■■■□□ 2.35
Col1a1P11087 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Col1a1P11087 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Col1a1P11087 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Col1a1P11087 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Col1a1P11087 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC29.72■■■□□ 2.35
Col1a1P11087 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC29.7■■■□□ 2.35
Col1a1P11087 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
Col1a1P11087 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Col1a1P11087 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Col1a1P11087 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
Col1a1P11087 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC29.68■■■□□ 2.34
Col1a1P11087 Gm11175-201ENSMUST00000116172 543 ntBASIC29.68■■■□□ 2.34
Col1a1P11087 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
Col1a1P11087 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
Col1a1P11087 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC29.67■■■□□ 2.34
Col1a1P11087 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
Col1a1P11087 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Col1a1P11087 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC29.65■■■□□ 2.34
Col1a1P11087 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Col1a1P11087 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC29.65■■■□□ 2.34
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms