Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm25239-201ENSMUST00000174915 86 ntBASIC47,64■■■■■ 5,22
Col1a1P11087 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC44,26■■■■■ 4,68
Col1a1P11087 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC43,54■■■■■ 4,56
Col1a1P11087 Gm24109-201ENSMUST00000175489 103 ntBASIC41,5■■■■■ 4,23
Col1a1P11087 Gm15042-201ENSMUST00000120212 883 ntBASIC41,29■■■■■ 4,2
Col1a1P11087 Gm15045-201ENSMUST00000117359 883 ntBASIC40,34■■■■■ 4,05
Col1a1P11087 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC40,26■■■■■ 4,04
Col1a1P11087 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC40,16■■■■■ 4,02
Col1a1P11087 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC40,13■■■■■ 4,01
Col1a1P11087 Gm23366-201ENSMUST00000175022 89 ntBASIC39,75■■■■□ 3,95
Col1a1P11087 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC39,57■■■■□ 3,93
Col1a1P11087 AC153911.1-202ENSMUST00000218534 1034 ntBASIC38,78■■■■□ 3,8
Col1a1P11087 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38,68■■■■□ 3,78
Col1a1P11087 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC38,5■■■■□ 3,75
Col1a1P11087 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC38,44■■■■□ 3,74
Col1a1P11087 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC38,43■■■■□ 3,74
Col1a1P11087 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC38,38■■■■□ 3,73
Col1a1P11087 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC38,13■■■■□ 3,69
Col1a1P11087 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC38,06■■■■□ 3,68
Col1a1P11087 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38,05■■■■□ 3,68
Col1a1P11087 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC37,89■■■■□ 3,66
Col1a1P11087 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC37,82■■■■□ 3,64
Col1a1P11087 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC37,79■■■■□ 3,64
Col1a1P11087 Gm25238-201ENSMUST00000174914 89 ntBASIC37,7■■■■□ 3,63
Col1a1P11087 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC37,47■■■■□ 3,59
Col1a1P11087 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC37,32■■■■□ 3,56
Col1a1P11087 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC37,16■■■■□ 3,54
Col1a1P11087 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC37,1■■■■□ 3,53
Col1a1P11087 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC37,08■■■■□ 3,53
Col1a1P11087 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC37,03■■■■□ 3,52
Col1a1P11087 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36,88■■■■□ 3,49
Col1a1P11087 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC36,85■■■■□ 3,49
Col1a1P11087 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC36,77■■■■□ 3,48
Col1a1P11087 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC36,71■■■■□ 3,47
Col1a1P11087 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36,7■■■■□ 3,47
Col1a1P11087 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC36,57■■■■□ 3,44
Col1a1P11087 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC36,56■■■■□ 3,44
Col1a1P11087 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC36,56■■■■□ 3,44
Col1a1P11087 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC36,33■■■■□ 3,41
Col1a1P11087 Gm25262-201ENSMUST00000174934 133 ntBASIC36,31■■■■□ 3,4
Col1a1P11087 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36,14■■■■□ 3,38
Col1a1P11087 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC36,13■■■■□ 3,37
Col1a1P11087 Gm27325-201ENSMUST00000175467 74 ntBASIC36,1■■■■□ 3,37
Col1a1P11087 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC35,92■■■■□ 3,34
Col1a1P11087 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC35,84■■■■□ 3,33
Col1a1P11087 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35,81■■■■□ 3,32
Col1a1P11087 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC35,76■■■■□ 3,32
Col1a1P11087 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC35,73■■■■□ 3,31
Col1a1P11087 Rab21-202ENSMUST00000218831 843 ntBASIC35,73■■■■□ 3,31
Col1a1P11087 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC35,7■■■■□ 3,3
Col1a1P11087 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC35,66■■■■□ 3,3
Col1a1P11087 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35,65■■■■□ 3,3
Col1a1P11087 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC35,62■■■■□ 3,29
Col1a1P11087 Gm26115-201ENSMUST00000175605 87 ntBASIC35,58■■■■□ 3,29
Col1a1P11087 Psd-208ENSMUST00000224556 2034 ntBASIC35,54■■■■□ 3,28
Col1a1P11087 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC35,45■■■■□ 3,27
Col1a1P11087 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC35,42■■■■□ 3,26
Col1a1P11087 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC35,39■■■■□ 3,26
Col1a1P11087 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC35,35■■■■□ 3,25
Col1a1P11087 Gm8109-201ENSMUST00000194076 746 ntBASIC35,34■■■■□ 3,25
Col1a1P11087 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC35,33■■■■□ 3,25
Col1a1P11087 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC35,32■■■■□ 3,24
Col1a1P11087 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC35,23■■■■□ 3,23
Col1a1P11087 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC35,21■■■■□ 3,23
Col1a1P11087 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC35,14■■■■□ 3,22
Col1a1P11087 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC35,04■■■■□ 3,2
Col1a1P11087 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC35,03■■■■□ 3,2
Col1a1P11087 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC34,98■■■■□ 3,19
Col1a1P11087 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC34,91■■■■□ 3,18
Col1a1P11087 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC34,9■■■■□ 3,18
Col1a1P11087 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC34,88■■■■□ 3,17
Col1a1P11087 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC34,88■■■■□ 3,17
Col1a1P11087 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC34,74■■■■□ 3,15
Col1a1P11087 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34,69■■■■□ 3,14
Col1a1P11087 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC34,69■■■■□ 3,14
Col1a1P11087 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC34,65■■■■□ 3,14
Col1a1P11087 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC34,63■■■■□ 3,13
Col1a1P11087 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC34,61■■■■□ 3,13
Col1a1P11087 Gm17082-201ENSMUST00000166043 1091 ntBASIC34,58■■■■□ 3,13
Col1a1P11087 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC34,57■■■■□ 3,12
Col1a1P11087 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34,49■■■■□ 3,11
Col1a1P11087 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34,46■■■■□ 3,11
Col1a1P11087 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC34,46■■■■□ 3,11
Col1a1P11087 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34,45■■■■□ 3,11
Col1a1P11087 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC34,42■■■■□ 3,1
Col1a1P11087 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC34,33■■■■□ 3,09
Col1a1P11087 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC34,33■■■■□ 3,09
Col1a1P11087 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC34,26■■■■□ 3,08
Col1a1P11087 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34,24■■■■□ 3,07
Col1a1P11087 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC34,22■■■■□ 3,07
Col1a1P11087 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC34,22■■■■□ 3,07
Col1a1P11087 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC34,21■■■■□ 3,07
Col1a1P11087 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC34,21■■■■□ 3,07
Col1a1P11087 Gm24804-201ENSMUST00000174982 85 ntBASIC34,19■■■■□ 3,06
Col1a1P11087 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC34,16■■■■□ 3,06
Col1a1P11087 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC34,15■■■■□ 3,06
Col1a1P11087 Gm27322-201ENSMUST00000184007 104 ntBASIC34,09■■■■□ 3,05
Col1a1P11087 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC34,07■■■■□ 3,04
Col1a1P11087 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC34,06■■■■□ 3,04
Col1a1P11087 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34,02■■■■□ 3,04
Retrieved 100 of 76,532 protein–RNA pairs in 23,6 ms