Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 AC008403.3-201ENST00000598924 454 ntBASIC19.08■□□□□ 0.64
SHANK1Q9Y566 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.08■□□□□ 0.64
SHANK1Q9Y566 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 AC073648.6-201ENST00000641589 218 ntBASIC19.07■□□□□ 0.64
SHANK1Q9Y566 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK1Q9Y566 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 AC053503.5-201ENST00000601508 636 ntBASIC19.06■□□□□ 0.64
SHANK1Q9Y566 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.06■□□□□ 0.64
SHANK1Q9Y566 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 KRT16P2-201ENST00000414673 1423 ntBASIC19.06■□□□□ 0.64
SHANK1Q9Y566 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK1Q9Y566 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.05■□□□□ 0.64
SHANK1Q9Y566 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.05■□□□□ 0.64
SHANK1Q9Y566 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
SHANK1Q9Y566 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SHANK1Q9Y566 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK1Q9Y566 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.05■□□□□ 0.64
SHANK1Q9Y566 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.05■□□□□ 0.64
SHANK1Q9Y566 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.05■□□□□ 0.64
SHANK1Q9Y566 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK1Q9Y566 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.04■□□□□ 0.64
SHANK1Q9Y566 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 POU5F1P4-201ENST00000413175 1085 ntBASIC19.03■□□□□ 0.64
SHANK1Q9Y566 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.03■□□□□ 0.64
SHANK1Q9Y566 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.03■□□□□ 0.64
SHANK1Q9Y566 AL359736.2-201ENST00000621992 437 ntBASIC19.03■□□□□ 0.64
SHANK1Q9Y566 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms