Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 MIR3181-201ENST00000578512 73 ntBASIC19.1■□□□□ 0.65
DDX28Q9NUL7 AL031602.1-201ENST00000633169 911 ntBASIC19.1■□□□□ 0.65
DDX28Q9NUL7 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
DDX28Q9NUL7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
DDX28Q9NUL7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
DDX28Q9NUL7 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 AL139246.5-201ENST00000606645 996 ntBASIC19.08■□□□□ 0.64
DDX28Q9NUL7 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
DDX28Q9NUL7 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.07■□□□□ 0.64
DDX28Q9NUL7 HCG11-201ENST00000411553 5696 ntBASIC19.07■□□□□ 0.64
DDX28Q9NUL7 FAM99A-202ENST00000538190 1989 ntBASIC19.06■□□□□ 0.64
DDX28Q9NUL7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 MIR638-201ENST00000385237 100 ntBASIC19.06■□□□□ 0.64
DDX28Q9NUL7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 OR2I1P-207ENST00000453522 948 ntBASIC19.06■□□□□ 0.64
DDX28Q9NUL7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.06■□□□□ 0.64
DDX28Q9NUL7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.06■□□□□ 0.64
DDX28Q9NUL7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms