Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
EXOSC3Q9NQT5 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EXOSC3Q9NQT5 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 AL049796.1-201ENST00000565336 1766 ntBASIC19.19■□□□□ 0.66
EXOSC3Q9NQT5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 AC138907.5-202ENST00000569484 235 ntBASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
EXOSC3Q9NQT5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 POU5F1P4-201ENST00000413175 1085 ntBASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 CCDC92B-201ENST00000575506 885 ntBASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EXOSC3Q9NQT5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 AL137060.1-201ENST00000618151 2648 ntBASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms