Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.47■□□□□ 0.55
LIME1Q9H400 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIME1Q9H400 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIME1Q9H400 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 FBXW4P1-201ENST00000426721 2239 ntBASIC18.46■□□□□ 0.55
LIME1Q9H400 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.46■□□□□ 0.55
LIME1Q9H400 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 KRT18P29-201ENST00000397031 1267 ntBASIC18.46■□□□□ 0.55
LIME1Q9H400 AC073210.2-201ENST00000430369 194 ntBASIC18.46■□□□□ 0.55
LIME1Q9H400 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.46■□□□□ 0.55
LIME1Q9H400 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LIME1Q9H400 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC18.46■□□□□ 0.55
LIME1Q9H400 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 AC009237.3-201ENST00000393279 1427 ntBASIC18.46■□□□□ 0.55
LIME1Q9H400 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
LIME1Q9H400 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.46■□□□□ 0.55
LIME1Q9H400 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIME1Q9H400 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.46■□□□□ 0.54
LIME1Q9H400 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIME1Q9H400 PRORSD1P-201ENST00000295112 541 ntBASIC18.45■□□□□ 0.54
LIME1Q9H400 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIME1Q9H400 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.45■□□□□ 0.54
LIME1Q9H400 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.45■□□□□ 0.54
LIME1Q9H400 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.45■□□□□ 0.54
LIME1Q9H400 AC133552.2-202ENST00000575694 574 ntBASIC18.45■□□□□ 0.54
LIME1Q9H400 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.45■□□□□ 0.54
LIME1Q9H400 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.45■□□□□ 0.54
LIME1Q9H400 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
LIME1Q9H400 ITM2C-210ENST00000620962 501 ntBASIC18.45■□□□□ 0.54
LIME1Q9H400 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.45■□□□□ 0.54
LIME1Q9H400 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIME1Q9H400 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIME1Q9H400 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
LIME1Q9H400 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.44■□□□□ 0.54
LIME1Q9H400 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.44■□□□□ 0.54
LIME1Q9H400 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
LIME1Q9H400 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
LIME1Q9H400 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.44■□□□□ 0.54
LIME1Q9H400 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
LIME1Q9H400 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
LIME1Q9H400 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIME1Q9H400 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 RPS2P52-201ENST00000469610 820 ntBASIC18.43■□□□□ 0.54
LIME1Q9H400 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.43■□□□□ 0.54
LIME1Q9H400 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.43■□□□□ 0.54
LIME1Q9H400 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 AL024507.2-201ENST00000606070 2574 ntBASIC18.43■□□□□ 0.54
LIME1Q9H400 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIME1Q9H400 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.42■□□□□ 0.54
LIME1Q9H400 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIME1Q9H400 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIME1Q9H400 AC010536.3-201ENST00000620306 533 ntBASIC18.42■□□□□ 0.54
LIME1Q9H400 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LIME1Q9H400 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIME1Q9H400 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.42■□□□□ 0.54
LIME1Q9H400 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIME1Q9H400 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIME1Q9H400 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LIME1Q9H400 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIME1Q9H400 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIME1Q9H400 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIME1Q9H400 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.41■□□□□ 0.54
LIME1Q9H400 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.41■□□□□ 0.54
LIME1Q9H400 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIME1Q9H400 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
LIME1Q9H400 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIME1Q9H400 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LIME1Q9H400 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIME1Q9H400 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.41■□□□□ 0.54
LIME1Q9H400 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.41■□□□□ 0.54
LIME1Q9H400 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.4■□□□□ 0.54
LIME1Q9H400 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LIME1Q9H400 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIME1Q9H400 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIME1Q9H400 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIME1Q9H400 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.4■□□□□ 0.54
LIME1Q9H400 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
LIME1Q9H400 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.4■□□□□ 0.54
LIME1Q9H400 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms