Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM54Q9BYV2 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
TRIM54Q9BYV2 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM54Q9BYV2 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM54Q9BYV2 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
TRIM54Q9BYV2 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM54Q9BYV2 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM54Q9BYV2 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM54Q9BYV2 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM54Q9BYV2 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM54Q9BYV2 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM54Q9BYV2 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
TRIM54Q9BYV2 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM54Q9BYV2 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM54Q9BYV2 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM54Q9BYV2 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM54Q9BYV2 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
TRIM54Q9BYV2 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 MIR6084-201ENST00000622012 110 ntBASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM54Q9BYV2 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM54Q9BYV2 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM54Q9BYV2 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms