Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.65■□□□□ 0.58
USB1Q9BQ65 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
USB1Q9BQ65 AC053503.5-201ENST00000601508 636 ntBASIC18.65■□□□□ 0.58
USB1Q9BQ65 AC080038.1-201ENST00000611274 1154 ntBASIC18.65■□□□□ 0.58
USB1Q9BQ65 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.65■□□□□ 0.58
USB1Q9BQ65 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USB1Q9BQ65 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
USB1Q9BQ65 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
USB1Q9BQ65 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USB1Q9BQ65 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USB1Q9BQ65 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
USB1Q9BQ65 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
USB1Q9BQ65 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
USB1Q9BQ65 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.64■□□□□ 0.58
USB1Q9BQ65 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
USB1Q9BQ65 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
USB1Q9BQ65 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USB1Q9BQ65 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.64■□□□□ 0.57
USB1Q9BQ65 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USB1Q9BQ65 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.64■□□□□ 0.57
USB1Q9BQ65 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USB1Q9BQ65 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.64■□□□□ 0.57
USB1Q9BQ65 AP001160.3-201ENST00000601484 763 ntBASIC18.64■□□□□ 0.57
USB1Q9BQ65 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USB1Q9BQ65 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USB1Q9BQ65 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USB1Q9BQ65 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USB1Q9BQ65 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USB1Q9BQ65 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USB1Q9BQ65 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.63■□□□□ 0.57
USB1Q9BQ65 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
USB1Q9BQ65 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 AC139530.1-201ENST00000575312 1977 ntBASIC18.62■□□□□ 0.57
USB1Q9BQ65 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.62■□□□□ 0.57
USB1Q9BQ65 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 AC010141.2-201ENST00000452426 721 ntBASIC18.62■□□□□ 0.57
USB1Q9BQ65 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.62■□□□□ 0.57
USB1Q9BQ65 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.62■□□□□ 0.57
USB1Q9BQ65 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.62■□□□□ 0.57
USB1Q9BQ65 SLC7A5P1-201ENST00000568957 537 ntBASIC18.62■□□□□ 0.57
USB1Q9BQ65 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.62■□□□□ 0.57
USB1Q9BQ65 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
USB1Q9BQ65 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USB1Q9BQ65 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 EEF1DP3-203ENST00000566025 782 ntBASIC18.61■□□□□ 0.57
USB1Q9BQ65 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.61■□□□□ 0.57
USB1Q9BQ65 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USB1Q9BQ65 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USB1Q9BQ65 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.6■□□□□ 0.57
USB1Q9BQ65 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms