Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 UPK3BP1-201ENST00000428678 509 ntBASIC18.6■□□□□ 0.57
COL12A1Q99715 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.6■□□□□ 0.57
COL12A1Q99715 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL12A1Q99715 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL12A1Q99715 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.59■□□□□ 0.57
COL12A1Q99715 AC092368.3-202ENST00000574180 1591 ntBASIC18.59■□□□□ 0.57
COL12A1Q99715 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL12A1Q99715 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.59■□□□□ 0.57
COL12A1Q99715 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL12A1Q99715 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.59■□□□□ 0.57
COL12A1Q99715 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL12A1Q99715 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL12A1Q99715 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
COL12A1Q99715 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL12A1Q99715 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.58■□□□□ 0.57
COL12A1Q99715 POM121L13P-201ENST00000422362 380 ntBASIC18.58■□□□□ 0.57
COL12A1Q99715 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.58■□□□□ 0.57
COL12A1Q99715 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
COL12A1Q99715 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.58■□□□□ 0.57
COL12A1Q99715 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.58■□□□□ 0.57
COL12A1Q99715 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL12A1Q99715 NTF6B-201ENST00000591913 560 ntBASIC18.58■□□□□ 0.57
COL12A1Q99715 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL12A1Q99715 MTDHP1-201ENST00000605323 784 ntBASIC18.58■□□□□ 0.57
COL12A1Q99715 AP001412.1-201ENST00000608405 714 ntBASIC18.58■□□□□ 0.57
COL12A1Q99715 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL12A1Q99715 RBM17P2-201ENST00000616397 1405 ntBASIC18.58■□□□□ 0.57
COL12A1Q99715 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL12A1Q99715 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL12A1Q99715 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL12A1Q99715 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.58■□□□□ 0.56
COL12A1Q99715 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL12A1Q99715 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.58■□□□□ 0.56
COL12A1Q99715 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL12A1Q99715 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL12A1Q99715 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.58■□□□□ 0.56
COL12A1Q99715 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL12A1Q99715 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL12A1Q99715 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.58■□□□□ 0.56
COL12A1Q99715 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.58■□□□□ 0.56
COL12A1Q99715 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.57■□□□□ 0.56
COL12A1Q99715 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 AL135905.2-201ENST00000584934 1404 ntBASIC18.57■□□□□ 0.56
COL12A1Q99715 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.57■□□□□ 0.56
COL12A1Q99715 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL12A1Q99715 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.57■□□□□ 0.56
COL12A1Q99715 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
COL12A1Q99715 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
COL12A1Q99715 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL12A1Q99715 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL12A1Q99715 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL12A1Q99715 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.56■□□□□ 0.56
COL12A1Q99715 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.56■□□□□ 0.56
COL12A1Q99715 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL12A1Q99715 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL12A1Q99715 MIR6786-201ENST00000616843 113 ntBASIC18.56■□□□□ 0.56
COL12A1Q99715 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.56■□□□□ 0.56
COL12A1Q99715 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL12A1Q99715 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL12A1Q99715 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL12A1Q99715 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.56■□□□□ 0.56
COL12A1Q99715 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.56■□□□□ 0.56
COL12A1Q99715 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL12A1Q99715 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
COL12A1Q99715 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL12A1Q99715 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL12A1Q99715 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL12A1Q99715 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL12A1Q99715 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
COL12A1Q99715 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.55■□□□□ 0.56
COL12A1Q99715 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.55■□□□□ 0.56
COL12A1Q99715 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL12A1Q99715 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.55■□□□□ 0.56
COL12A1Q99715 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
COL12A1Q99715 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.55■□□□□ 0.56
COL12A1Q99715 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.55■□□□□ 0.56
COL12A1Q99715 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.55■□□□□ 0.56
COL12A1Q99715 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL12A1Q99715 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL12A1Q99715 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL12A1Q99715 LSM12P1-201ENST00000411836 588 ntBASIC18.54■□□□□ 0.56
COL12A1Q99715 KRT18P57-201ENST00000443599 1254 ntBASIC18.54■□□□□ 0.56
COL12A1Q99715 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL12A1Q99715 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL12A1Q99715 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL12A1Q99715 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL12A1Q99715 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL12A1Q99715 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL12A1Q99715 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
COL12A1Q99715 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL12A1Q99715 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL12A1Q99715 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL12A1Q99715 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms