Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CDX2Q99626 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CDX2Q99626 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CDX2Q99626 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC22.34■■□□□ 1.17
CDX2Q99626 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC22.34■■□□□ 1.17
CDX2Q99626 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
CDX2Q99626 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CDX2Q99626 TPM4P1-201ENST00000436100 807 ntBASIC22.34■■□□□ 1.17
CDX2Q99626 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
CDX2Q99626 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CDX2Q99626 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
CDX2Q99626 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CDX2Q99626 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CDX2Q99626 AC005521.1-201ENST00000393351 872 ntBASIC22.33■■□□□ 1.17
CDX2Q99626 AC239809.2-201ENST00000415381 517 ntBASIC22.33■■□□□ 1.17
CDX2Q99626 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
CDX2Q99626 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC22.33■■□□□ 1.17
CDX2Q99626 AL034346.1-201ENST00000568244 1277 ntBASIC22.33■■□□□ 1.17
CDX2Q99626 USF2-205ENST00000594064 1179 ntTSL 2 BASIC22.33■■□□□ 1.17
CDX2Q99626 FAM21FP-204ENST00000608637 956 ntBASIC22.33■■□□□ 1.17
CDX2Q99626 AC110285.5-201ENST00000611501 352 ntBASIC22.33■■□□□ 1.17
CDX2Q99626 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
CDX2Q99626 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
CDX2Q99626 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
CDX2Q99626 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CDX2Q99626 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.33■■□□□ 1.16
CDX2Q99626 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.33■■□□□ 1.16
CDX2Q99626 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.32■■□□□ 1.16
CDX2Q99626 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CDX2Q99626 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC22.32■■□□□ 1.16
CDX2Q99626 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
CDX2Q99626 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CDX2Q99626 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CDX2Q99626 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.32■■□□□ 1.16
CDX2Q99626 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CDX2Q99626 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
CDX2Q99626 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CDX2Q99626 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CDX2Q99626 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
CDX2Q99626 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CDX2Q99626 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
CDX2Q99626 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CDX2Q99626 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.31■■□□□ 1.16
CDX2Q99626 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CDX2Q99626 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.31■■□□□ 1.16
CDX2Q99626 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.31■■□□□ 1.16
CDX2Q99626 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
CDX2Q99626 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CDX2Q99626 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CDX2Q99626 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.31■■□□□ 1.16
CDX2Q99626 MIR6786-201ENST00000616843 113 ntBASIC22.31■■□□□ 1.16
CDX2Q99626 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
CDX2Q99626 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CDX2Q99626 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.3■■□□□ 1.16
CDX2Q99626 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC22.3■■□□□ 1.16
CDX2Q99626 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CDX2Q99626 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CDX2Q99626 RARRES2P10-201ENST00000564312 460 ntBASIC22.3■■□□□ 1.16
CDX2Q99626 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.3■■□□□ 1.16
CDX2Q99626 AC145285.6-201ENST00000604632 637 ntBASIC22.3■■□□□ 1.16
CDX2Q99626 OR7E47P-201ENST00000546390 1422 ntBASIC22.3■■□□□ 1.16
CDX2Q99626 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.3■■□□□ 1.16
CDX2Q99626 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CDX2Q99626 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDX2Q99626 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDX2Q99626 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CDX2Q99626 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC22.29■■□□□ 1.16
CDX2Q99626 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC22.29■■□□□ 1.16
CDX2Q99626 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.29■■□□□ 1.16
CDX2Q99626 AC026471.5-201ENST00000615068 467 ntBASIC22.29■■□□□ 1.16
CDX2Q99626 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.29■■□□□ 1.16
CDX2Q99626 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CDX2Q99626 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC22.28■■□□□ 1.16
CDX2Q99626 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC22.28■■□□□ 1.16
CDX2Q99626 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.28■■□□□ 1.16
CDX2Q99626 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDX2Q99626 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDX2Q99626 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.28■■□□□ 1.16
CDX2Q99626 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
CDX2Q99626 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC22.28■■□□□ 1.16
CDX2Q99626 AP003071.4-201ENST00000562276 1284 ntBASIC22.28■■□□□ 1.16
CDX2Q99626 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
CDX2Q99626 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
CDX2Q99626 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.28■■□□□ 1.16
CDX2Q99626 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDX2Q99626 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDX2Q99626 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CDX2Q99626 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.27■■□□□ 1.16
CDX2Q99626 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC22.27■■□□□ 1.16
CDX2Q99626 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDX2Q99626 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms