Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 AC011767.1-201ENST00000617410 1153 ntBASIC21.69■■□□□ 1.06
RPRD1AQ96P16 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
RPRD1AQ96P16 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RPRD1AQ96P16 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 MFSD11-216ENST00000590393 1141 ntBASIC21.67■■□□□ 1.06
RPRD1AQ96P16 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 AC080038.1-201ENST00000611274 1154 ntBASIC21.67■■□□□ 1.06
RPRD1AQ96P16 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RPRD1AQ96P16 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 AC079834.2-201ENST00000609776 1949 ntBASIC21.66■■□□□ 1.06
RPRD1AQ96P16 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPRD1AQ96P16 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 KRT16P2-201ENST00000414673 1423 ntBASIC21.65■■□□□ 1.06
RPRD1AQ96P16 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPRD1AQ96P16 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RPRD1AQ96P16 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RPRD1AQ96P16 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.64■■□□□ 1.06
RPRD1AQ96P16 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPRD1AQ96P16 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPRD1AQ96P16 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.64■■□□□ 1.05
RPRD1AQ96P16 SLC7A5P1-201ENST00000568957 537 ntBASIC21.64■■□□□ 1.05
RPRD1AQ96P16 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms