Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 KRT18P14-201ENST00000534205 1250 ntBASIC23.33■■□□□ 1.33
CCDC65Q8IXS2 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC65Q8IXS2 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC65Q8IXS2 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC65Q8IXS2 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC65Q8IXS2 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC65Q8IXS2 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
CCDC65Q8IXS2 AC005229.4-201ENST00000610085 2198 ntBASIC23.33■■□□□ 1.32
CCDC65Q8IXS2 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 AF106564.1-201ENST00000607058 2553 ntBASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC65Q8IXS2 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC65Q8IXS2 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC65Q8IXS2 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 EFS-203ENST00000429593 2610 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 AC138907.5-202ENST00000569484 235 ntBASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC65Q8IXS2 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 AC008175.2-201ENST00000612840 297 ntBASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC65Q8IXS2 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC65Q8IXS2 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
CCDC65Q8IXS2 COX20-201ENST00000366528 568 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC65Q8IXS2 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC23.27■■□□□ 1.32
CCDC65Q8IXS2 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC65Q8IXS2 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.27■■□□□ 1.32
CCDC65Q8IXS2 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC65Q8IXS2 AL049796.1-201ENST00000565336 1766 ntBASIC23.27■■□□□ 1.32
CCDC65Q8IXS2 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms