Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AL355472.2-201ENST00000422958 438 ntBASIC24.43■■□□□ 1.5
HMGCS2P54868 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
HMGCS2P54868 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC24.43■■□□□ 1.5
HMGCS2P54868 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC24.43■■□□□ 1.5
HMGCS2P54868 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC24.43■■□□□ 1.5
HMGCS2P54868 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
HMGCS2P54868 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
HMGCS2P54868 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
HMGCS2P54868 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
HMGCS2P54868 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGCS2P54868 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
HMGCS2P54868 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGCS2P54868 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.42■■□□□ 1.5
HMGCS2P54868 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
HMGCS2P54868 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGCS2P54868 AC128676.1-201ENST00000454392 318 ntBASIC24.42■■□□□ 1.5
HMGCS2P54868 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGCS2P54868 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGCS2P54868 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC24.42■■□□□ 1.5
HMGCS2P54868 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
HMGCS2P54868 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC24.42■■□□□ 1.5
HMGCS2P54868 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
HMGCS2P54868 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
HMGCS2P54868 AC026471.6-201ENST00000622954 1905 ntBASIC24.41■■□□□ 1.5
HMGCS2P54868 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGCS2P54868 KRT17P1-201ENST00000399211 1546 ntBASIC24.41■■□□□ 1.5
HMGCS2P54868 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGCS2P54868 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.41■■□□□ 1.5
HMGCS2P54868 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
HMGCS2P54868 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGCS2P54868 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGCS2P54868 AC091799.1-201ENST00000422823 811 ntBASIC24.41■■□□□ 1.5
HMGCS2P54868 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGCS2P54868 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
HMGCS2P54868 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC24.41■■□□□ 1.5
HMGCS2P54868 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC24.41■■□□□ 1.5
HMGCS2P54868 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.41■■□□□ 1.5
HMGCS2P54868 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGCS2P54868 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGCS2P54868 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGCS2P54868 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGCS2P54868 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGCS2P54868 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
HMGCS2P54868 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC24.4■■□□□ 1.5
HMGCS2P54868 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC24.4■■□□□ 1.5
HMGCS2P54868 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
HMGCS2P54868 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.4■■□□□ 1.5
HMGCS2P54868 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC24.4■■□□□ 1.5
HMGCS2P54868 UNC93B5-201ENST00000530315 699 ntBASIC24.4■■□□□ 1.5
HMGCS2P54868 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGCS2P54868 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.4■■□□□ 1.5
HMGCS2P54868 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC24.39■■□□□ 1.5
HMGCS2P54868 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
HMGCS2P54868 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.39■■□□□ 1.5
HMGCS2P54868 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGCS2P54868 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
HMGCS2P54868 AL158047.1-201ENST00000445918 881 ntBASIC24.39■■□□□ 1.49
HMGCS2P54868 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
HMGCS2P54868 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC24.39■■□□□ 1.49
HMGCS2P54868 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
HMGCS2P54868 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGCS2P54868 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGCS2P54868 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGCS2P54868 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.49
HMGCS2P54868 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
HMGCS2P54868 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
HMGCS2P54868 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGCS2P54868 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
HMGCS2P54868 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC24.38■■□□□ 1.49
HMGCS2P54868 CASP6-205ENST00000505486 538 ntTSL 4 BASIC24.38■■□□□ 1.49
HMGCS2P54868 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC24.38■■□□□ 1.49
HMGCS2P54868 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC24.38■■□□□ 1.49
HMGCS2P54868 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGCS2P54868 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
HMGCS2P54868 AC080038.3-201ENST00000623346 1952 ntBASIC24.38■■□□□ 1.49
HMGCS2P54868 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
HMGCS2P54868 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
HMGCS2P54868 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC24.37■■□□□ 1.49
HMGCS2P54868 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
HMGCS2P54868 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC24.37■■□□□ 1.49
HMGCS2P54868 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGCS2P54868 GATS-209ENST00000454084 1030 ntTSL 3 BASIC24.37■■□□□ 1.49
HMGCS2P54868 AC026366.1-201ENST00000488803 879 ntBASIC24.37■■□□□ 1.49
HMGCS2P54868 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGCS2P54868 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGCS2P54868 AC142381.4-202ENST00000563973 229 ntBASIC24.37■■□□□ 1.49
HMGCS2P54868 FAM21FP-204ENST00000608637 956 ntBASIC24.37■■□□□ 1.49
HMGCS2P54868 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HMGCS2P54868 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HMGCS2P54868 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HMGCS2P54868 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC24.36■■□□□ 1.49
HMGCS2P54868 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC24.36■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms