Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 AC003102.1-202ENST00000563394 1796 ntBASIC20.57■□□□□ 0.88
SHMT2P34897 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SHMT2P34897 EEF1DP3-203ENST00000566025 782 ntBASIC20.57■□□□□ 0.88
SHMT2P34897 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.57■□□□□ 0.88
SHMT2P34897 AC053503.5-201ENST00000601508 636 ntBASIC20.57■□□□□ 0.88
SHMT2P34897 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SHMT2P34897 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
SHMT2P34897 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.56■□□□□ 0.88
SHMT2P34897 AC092666.2-201ENST00000613287 246 ntBASIC20.56■□□□□ 0.88
SHMT2P34897 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
SHMT2P34897 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.56■□□□□ 0.88
SHMT2P34897 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHMT2P34897 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.55■□□□□ 0.88
SHMT2P34897 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.55■□□□□ 0.88
SHMT2P34897 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.55■□□□□ 0.88
SHMT2P34897 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.55■□□□□ 0.88
SHMT2P34897 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHMT2P34897 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHMT2P34897 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SHMT2P34897 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.54■□□□□ 0.88
SHMT2P34897 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.54■□□□□ 0.88
SHMT2P34897 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.54■□□□□ 0.88
SHMT2P34897 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.54■□□□□ 0.88
SHMT2P34897 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.54■□□□□ 0.88
SHMT2P34897 AC137761.2-201ENST00000561729 223 ntBASIC20.54■□□□□ 0.88
SHMT2P34897 AC145350.3-201ENST00000569033 163 ntBASIC20.54■□□□□ 0.88
SHMT2P34897 AC138907.5-202ENST00000569484 235 ntBASIC20.54■□□□□ 0.88
SHMT2P34897 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.54■□□□□ 0.88
SHMT2P34897 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.54■□□□□ 0.88
SHMT2P34897 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.54■□□□□ 0.88
SHMT2P34897 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHMT2P34897 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHMT2P34897 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHMT2P34897 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHMT2P34897 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHMT2P34897 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHMT2P34897 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHMT2P34897 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHMT2P34897 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.53■□□□□ 0.88
SHMT2P34897 AC026471.6-201ENST00000622954 1905 ntBASIC20.53■□□□□ 0.88
SHMT2P34897 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHMT2P34897 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.53■□□□□ 0.88
SHMT2P34897 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.53■□□□□ 0.88
SHMT2P34897 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.53■□□□□ 0.88
SHMT2P34897 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHMT2P34897 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHMT2P34897 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHMT2P34897 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.52■□□□□ 0.88
SHMT2P34897 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHMT2P34897 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHMT2P34897 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
SHMT2P34897 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.52■□□□□ 0.88
SHMT2P34897 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHMT2P34897 AC016769.1-201ENST00000409132 1010 ntBASIC20.52■□□□□ 0.88
SHMT2P34897 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.52■□□□□ 0.88
SHMT2P34897 AC010141.2-201ENST00000452426 721 ntBASIC20.52■□□□□ 0.88
SHMT2P34897 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.52■□□□□ 0.88
SHMT2P34897 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.52■□□□□ 0.88
SHMT2P34897 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.52■□□□□ 0.88
SHMT2P34897 AP001160.3-201ENST00000601484 763 ntBASIC20.52■□□□□ 0.88
SHMT2P34897 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHMT2P34897 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHMT2P34897 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
SHMT2P34897 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHMT2P34897 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SHMT2P34897 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHMT2P34897 AC073130.3-201ENST00000624389 2278 ntBASIC20.51■□□□□ 0.87
SHMT2P34897 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.51■□□□□ 0.87
SHMT2P34897 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHMT2P34897 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHMT2P34897 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.51■□□□□ 0.87
SHMT2P34897 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHMT2P34897 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.51■□□□□ 0.87
SHMT2P34897 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHMT2P34897 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms