Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL8A1P27658 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.41■□□□□ 0.54
COL8A1P27658 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.41■□□□□ 0.54
COL8A1P27658 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.41■□□□□ 0.54
COL8A1P27658 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.41■□□□□ 0.54
COL8A1P27658 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL8A1P27658 KRT17P2-201ENST00000300992 1314 ntBASIC18.41■□□□□ 0.54
COL8A1P27658 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL8A1P27658 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
COL8A1P27658 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL8A1P27658 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL8A1P27658 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.4■□□□□ 0.54
COL8A1P27658 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.4■□□□□ 0.54
COL8A1P27658 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL8A1P27658 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.4■□□□□ 0.54
COL8A1P27658 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.4■□□□□ 0.54
COL8A1P27658 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.4■□□□□ 0.54
COL8A1P27658 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.4■□□□□ 0.54
COL8A1P27658 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.4■□□□□ 0.54
COL8A1P27658 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.4■□□□□ 0.54
COL8A1P27658 HLA-B-256ENST00000639848 1089 ntBASIC18.4■□□□□ 0.54
COL8A1P27658 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.4■□□□□ 0.54
COL8A1P27658 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL8A1P27658 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL8A1P27658 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL8A1P27658 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL8A1P27658 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL8A1P27658 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL8A1P27658 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL8A1P27658 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL8A1P27658 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.39■□□□□ 0.53
COL8A1P27658 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL8A1P27658 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL8A1P27658 RBM17P2-201ENST00000616397 1405 ntBASIC18.39■□□□□ 0.53
COL8A1P27658 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL8A1P27658 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL8A1P27658 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.38■□□□□ 0.53
COL8A1P27658 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC18.38■□□□□ 0.53
COL8A1P27658 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.38■□□□□ 0.53
COL8A1P27658 TMPOP1-202ENST00000424642 1267 ntBASIC18.38■□□□□ 0.53
COL8A1P27658 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.38■□□□□ 0.53
COL8A1P27658 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.38■□□□□ 0.53
COL8A1P27658 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.38■□□□□ 0.53
COL8A1P27658 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.38■□□□□ 0.53
COL8A1P27658 PNMA6B-201ENST00000538162 1200 ntBASIC18.38■□□□□ 0.53
COL8A1P27658 AL162412.1-201ENST00000567129 965 ntBASIC18.38■□□□□ 0.53
COL8A1P27658 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.38■□□□□ 0.53
COL8A1P27658 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.38■□□□□ 0.53
COL8A1P27658 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL8A1P27658 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL8A1P27658 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL8A1P27658 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL8A1P27658 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL8A1P27658 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL8A1P27658 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL8A1P27658 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.38■□□□□ 0.53
COL8A1P27658 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL8A1P27658 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL8A1P27658 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.37■□□□□ 0.53
COL8A1P27658 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
COL8A1P27658 RPS2P55-201ENST00000397318 883 ntBASIC18.37■□□□□ 0.53
COL8A1P27658 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.37■□□□□ 0.53
COL8A1P27658 AC107956.1-201ENST00000494359 873 ntBASIC18.37■□□□□ 0.53
COL8A1P27658 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL8A1P27658 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.37■□□□□ 0.53
COL8A1P27658 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.37■□□□□ 0.53
COL8A1P27658 RN7SL850P-201ENST00000579959 291 ntBASIC18.37■□□□□ 0.53
COL8A1P27658 AC069544.1-201ENST00000609399 999 ntBASIC18.37■□□□□ 0.53
COL8A1P27658 AC008175.2-201ENST00000612840 297 ntBASIC18.37■□□□□ 0.53
COL8A1P27658 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL8A1P27658 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL8A1P27658 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL8A1P27658 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL8A1P27658 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL8A1P27658 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL8A1P27658 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL8A1P27658 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL8A1P27658 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL8A1P27658 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL8A1P27658 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL8A1P27658 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL8A1P27658 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL8A1P27658 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL8A1P27658 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.36■□□□□ 0.53
COL8A1P27658 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.36■□□□□ 0.53
COL8A1P27658 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.36■□□□□ 0.53
COL8A1P27658 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.36■□□□□ 0.53
COL8A1P27658 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL8A1P27658 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.36■□□□□ 0.53
COL8A1P27658 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL8A1P27658 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms