Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
BDNFP23560 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
BDNFP23560 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
BDNFP23560 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.24■■□□□ 1.15
BDNFP23560 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
BDNFP23560 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
BDNFP23560 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.23■■□□□ 1.15
BDNFP23560 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
BDNFP23560 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
BDNFP23560 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.23■■□□□ 1.15
BDNFP23560 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.23■■□□□ 1.15
BDNFP23560 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.23■■□□□ 1.15
BDNFP23560 TERF1P5-201ENST00000477545 1207 ntBASIC22.23■■□□□ 1.15
BDNFP23560 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC22.23■■□□□ 1.15
BDNFP23560 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
BDNFP23560 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
BDNFP23560 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
BDNFP23560 KRT16P2-201ENST00000414673 1423 ntBASIC22.23■■□□□ 1.15
BDNFP23560 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
BDNFP23560 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
BDNFP23560 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
BDNFP23560 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
BDNFP23560 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
BDNFP23560 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
BDNFP23560 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
BDNFP23560 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.22■■□□□ 1.15
BDNFP23560 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.22■■□□□ 1.15
BDNFP23560 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.22■■□□□ 1.15
BDNFP23560 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
BDNFP23560 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
BDNFP23560 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
BDNFP23560 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
BDNFP23560 NARF-205ENST00000412079 1760 ntTSL 5 BASIC22.21■■□□□ 1.15
BDNFP23560 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
BDNFP23560 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 HLA-L-209ENST00000420110 1011 ntBASIC22.21■■□□□ 1.15
BDNFP23560 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
BDNFP23560 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.21■■□□□ 1.15
BDNFP23560 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.21■■□□□ 1.15
BDNFP23560 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.21■■□□□ 1.15
BDNFP23560 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 AC005181.1-201ENST00000604782 1256 ntBASIC22.21■■□□□ 1.15
BDNFP23560 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.21■■□□□ 1.15
BDNFP23560 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
BDNFP23560 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.2■■□□□ 1.14
BDNFP23560 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC22.2■■□□□ 1.14
BDNFP23560 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
BDNFP23560 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
BDNFP23560 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
BDNFP23560 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.2■■□□□ 1.14
BDNFP23560 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
BDNFP23560 AL050303.2-201ENST00000619798 666 ntBASIC22.2■■□□□ 1.14
BDNFP23560 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.2■■□□□ 1.14
BDNFP23560 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.19■■□□□ 1.14
BDNFP23560 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.19■■□□□ 1.14
BDNFP23560 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
BDNFP23560 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC22.19■■□□□ 1.14
BDNFP23560 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
BDNFP23560 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
BDNFP23560 WT1-AS_3.1-201ENST00000613262 234 ntBASIC22.19■■□□□ 1.14
BDNFP23560 AC013268.1-206ENST00000638368 961 ntBASIC22.19■■□□□ 1.14
BDNFP23560 AC112229.1-201ENST00000639295 961 ntBASIC22.19■■□□□ 1.14
BDNFP23560 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC22.19■■□□□ 1.14
BDNFP23560 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC22.19■■□□□ 1.14
BDNFP23560 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.19■■□□□ 1.14
BDNFP23560 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
BDNFP23560 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.18■■□□□ 1.14
BDNFP23560 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
BDNFP23560 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC22.18■■□□□ 1.14
BDNFP23560 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
BDNFP23560 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
BDNFP23560 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
BDNFP23560 NCF1B-203ENST00000435988 1254 ntBASIC22.18■■□□□ 1.14
BDNFP23560 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC22.18■■□□□ 1.14
BDNFP23560 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.18■■□□□ 1.14
BDNFP23560 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC22.18■■□□□ 1.14
BDNFP23560 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.18■■□□□ 1.14
BDNFP23560 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.18■■□□□ 1.14
BDNFP23560 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
BDNFP23560 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
BDNFP23560 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.17■■□□□ 1.14
BDNFP23560 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
BDNFP23560 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
BDNFP23560 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.17■■□□□ 1.14
BDNFP23560 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
BDNFP23560 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
BDNFP23560 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC22.17■■□□□ 1.14
BDNFP23560 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.17■■□□□ 1.14
BDNFP23560 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.17■■□□□ 1.14
BDNFP23560 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.17■■□□□ 1.14
BDNFP23560 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
BDNFP23560 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
BDNFP23560 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms