Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A1P20908 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
COL5A1P20908 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A1P20908 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.36■□□□□ 0.85
COL5A1P20908 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A1P20908 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.36■□□□□ 0.85
COL5A1P20908 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.36■□□□□ 0.85
COL5A1P20908 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A1P20908 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.36■□□□□ 0.85
COL5A1P20908 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
COL5A1P20908 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A1P20908 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A1P20908 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.35■□□□□ 0.85
COL5A1P20908 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.35■□□□□ 0.85
COL5A1P20908 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A1P20908 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL5A1P20908 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
COL5A1P20908 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
COL5A1P20908 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A1P20908 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.35■□□□□ 0.85
COL5A1P20908 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.35■□□□□ 0.85
COL5A1P20908 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
COL5A1P20908 KRT17P1-201ENST00000399211 1546 ntBASIC20.35■□□□□ 0.85
COL5A1P20908 AC127496.7-201ENST00000625110 1798 ntBASIC20.35■□□□□ 0.85
COL5A1P20908 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A1P20908 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A1P20908 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A1P20908 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL5A1P20908 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.34■□□□□ 0.85
COL5A1P20908 RPS2P4-201ENST00000476944 856 ntBASIC20.34■□□□□ 0.85
COL5A1P20908 FAM21FP-204ENST00000608637 956 ntBASIC20.34■□□□□ 0.85
COL5A1P20908 AC100791.3-201ENST00000617619 330 ntBASIC20.34■□□□□ 0.85
COL5A1P20908 AC073648.6-201ENST00000641589 218 ntBASIC20.34■□□□□ 0.85
COL5A1P20908 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
COL5A1P20908 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 AC087742.1-201ENST00000575880 1738 ntBASIC20.34■□□□□ 0.85
COL5A1P20908 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.34■□□□□ 0.85
COL5A1P20908 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.34■□□□□ 0.85
COL5A1P20908 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.34■□□□□ 0.85
COL5A1P20908 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.34■□□□□ 0.85
COL5A1P20908 AL359736.2-201ENST00000621992 437 ntBASIC20.34■□□□□ 0.85
COL5A1P20908 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A1P20908 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A1P20908 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A1P20908 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.33■□□□□ 0.85
COL5A1P20908 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
COL5A1P20908 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A1P20908 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A1P20908 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A1P20908 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A1P20908 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.33■□□□□ 0.85
COL5A1P20908 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
COL5A1P20908 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
COL5A1P20908 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A1P20908 AC091799.1-201ENST00000422823 811 ntBASIC20.33■□□□□ 0.85
COL5A1P20908 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
COL5A1P20908 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.33■□□□□ 0.85
COL5A1P20908 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
COL5A1P20908 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL5A1P20908 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
COL5A1P20908 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.33■□□□□ 0.84
COL5A1P20908 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.84
COL5A1P20908 AC068473.5-201ENST00000616428 2072 ntBASIC20.33■□□□□ 0.84
COL5A1P20908 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.32■□□□□ 0.84
COL5A1P20908 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COL5A1P20908 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A1P20908 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A1P20908 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.32■□□□□ 0.84
COL5A1P20908 CYP2T3P-201ENST00000601990 817 ntBASIC20.32■□□□□ 0.84
COL5A1P20908 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A1P20908 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.32■□□□□ 0.84
COL5A1P20908 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A1P20908 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A1P20908 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A1P20908 LSM12P1-201ENST00000411836 588 ntBASIC20.32■□□□□ 0.84
COL5A1P20908 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.32■□□□□ 0.84
COL5A1P20908 UBE2SP1-201ENST00000450587 669 ntBASIC20.32■□□□□ 0.84
COL5A1P20908 AC008550.1-201ENST00000511500 884 ntBASIC20.32■□□□□ 0.84
COL5A1P20908 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.32■□□□□ 0.84
COL5A1P20908 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A1P20908 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 AL355472.2-201ENST00000422958 438 ntBASIC20.31■□□□□ 0.84
COL5A1P20908 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.31■□□□□ 0.84
COL5A1P20908 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.31■□□□□ 0.84
COL5A1P20908 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.31■□□□□ 0.84
COL5A1P20908 AC139530.1-201ENST00000575312 1977 ntBASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms