Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
XRCC1P18887 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
XRCC1P18887 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.91■□□□□ 0.94
XRCC1P18887 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.91■□□□□ 0.94
XRCC1P18887 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.91■□□□□ 0.94
XRCC1P18887 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.91■□□□□ 0.94
XRCC1P18887 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.91■□□□□ 0.94
XRCC1P18887 AC055733.4-201ENST00000638462 1354 ntBASIC20.91■□□□□ 0.94
XRCC1P18887 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC1P18887 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC1P18887 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC1P18887 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC1P18887 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
XRCC1P18887 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.9■□□□□ 0.94
XRCC1P18887 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC1P18887 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.9■□□□□ 0.94
XRCC1P18887 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.9■□□□□ 0.94
XRCC1P18887 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC1P18887 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
XRCC1P18887 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC1P18887 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.9■□□□□ 0.94
XRCC1P18887 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.9■□□□□ 0.94
XRCC1P18887 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.9■□□□□ 0.94
XRCC1P18887 KRT19P1-201ENST00000405746 1186 ntBASIC20.9■□□□□ 0.94
XRCC1P18887 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.9■□□□□ 0.94
XRCC1P18887 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.9■□□□□ 0.94
XRCC1P18887 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC1P18887 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC1P18887 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
XRCC1P18887 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
XRCC1P18887 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
XRCC1P18887 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
XRCC1P18887 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
XRCC1P18887 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC1P18887 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.89■□□□□ 0.93
XRCC1P18887 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.89■□□□□ 0.93
XRCC1P18887 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.89■□□□□ 0.93
XRCC1P18887 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.89■□□□□ 0.93
XRCC1P18887 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC1P18887 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC1P18887 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
XRCC1P18887 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC1P18887 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC1P18887 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC1P18887 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC1P18887 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC1P18887 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
XRCC1P18887 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
XRCC1P18887 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
XRCC1P18887 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
XRCC1P18887 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.88■□□□□ 0.93
XRCC1P18887 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
XRCC1P18887 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.88■□□□□ 0.93
XRCC1P18887 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
XRCC1P18887 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
XRCC1P18887 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.87■□□□□ 0.93
XRCC1P18887 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
XRCC1P18887 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.87■□□□□ 0.93
XRCC1P18887 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.87■□□□□ 0.93
XRCC1P18887 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.87■□□□□ 0.93
XRCC1P18887 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
XRCC1P18887 KRT87P-202ENST00000534226 1464 ntBASIC20.87■□□□□ 0.93
XRCC1P18887 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC1P18887 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
XRCC1P18887 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
XRCC1P18887 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
XRCC1P18887 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
XRCC1P18887 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.86■□□□□ 0.93
XRCC1P18887 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.86■□□□□ 0.93
XRCC1P18887 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.86■□□□□ 0.93
XRCC1P18887 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.86■□□□□ 0.93
XRCC1P18887 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms