Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCNAP12004 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCNAP12004 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.42■□□□□ 0.86
PCNAP12004 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.42■□□□□ 0.86
PCNAP12004 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCNAP12004 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
PCNAP12004 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCNAP12004 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.42■□□□□ 0.86
PCNAP12004 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCNAP12004 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.42■□□□□ 0.86
PCNAP12004 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.41■□□□□ 0.86
PCNAP12004 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
PCNAP12004 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
PCNAP12004 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.41■□□□□ 0.86
PCNAP12004 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.41■□□□□ 0.86
PCNAP12004 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.41■□□□□ 0.86
PCNAP12004 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.41■□□□□ 0.86
PCNAP12004 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.41■□□□□ 0.86
PCNAP12004 MIR6084-201ENST00000622012 110 ntBASIC20.41■□□□□ 0.86
PCNAP12004 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 AC005224.4-201ENST00000583262 1652 ntBASIC20.41■□□□□ 0.86
PCNAP12004 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.41■□□□□ 0.86
PCNAP12004 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCNAP12004 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCNAP12004 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.4■□□□□ 0.86
PCNAP12004 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.4■□□□□ 0.86
PCNAP12004 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCNAP12004 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PCNAP12004 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.4■□□□□ 0.86
PCNAP12004 AL354811.1-201ENST00000610286 706 ntBASIC20.4■□□□□ 0.86
PCNAP12004 AC073130.3-201ENST00000624389 2278 ntBASIC20.4■□□□□ 0.86
PCNAP12004 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
PCNAP12004 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.39■□□□□ 0.86
PCNAP12004 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.39■□□□□ 0.86
PCNAP12004 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
PCNAP12004 IRS3P-201ENST00000223076 1006 ntBASIC20.39■□□□□ 0.85
PCNAP12004 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCNAP12004 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
PCNAP12004 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.39■□□□□ 0.85
PCNAP12004 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.39■□□□□ 0.85
PCNAP12004 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCNAP12004 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCNAP12004 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PCNAP12004 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.39■□□□□ 0.85
PCNAP12004 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PCNAP12004 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.38■□□□□ 0.85
PCNAP12004 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
PCNAP12004 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.38■□□□□ 0.85
PCNAP12004 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.38■□□□□ 0.85
PCNAP12004 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.38■□□□□ 0.85
PCNAP12004 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.38■□□□□ 0.85
PCNAP12004 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.38■□□□□ 0.85
PCNAP12004 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.38■□□□□ 0.85
PCNAP12004 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.38■□□□□ 0.85
PCNAP12004 AL358852.1-201ENST00000623174 1268 ntBASIC20.38■□□□□ 0.85
PCNAP12004 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.38■□□□□ 0.85
PCNAP12004 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCNAP12004 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.38■□□□□ 0.85
PCNAP12004 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
PCNAP12004 AC055733.4-201ENST00000638462 1354 ntBASIC20.37■□□□□ 0.85
PCNAP12004 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCNAP12004 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.37■□□□□ 0.85
PCNAP12004 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.37■□□□□ 0.85
PCNAP12004 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCNAP12004 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCNAP12004 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCNAP12004 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCNAP12004 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PCNAP12004 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PCNAP12004 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCNAP12004 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
PCNAP12004 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.36■□□□□ 0.85
PCNAP12004 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms