Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
HMGB1P09429 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
HMGB1P09429 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
HMGB1P09429 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.82■■□□□ 1.56
HMGB1P09429 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
HMGB1P09429 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC24.82■■□□□ 1.56
HMGB1P09429 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
HMGB1P09429 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGB1P09429 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.81■■□□□ 1.56
HMGB1P09429 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC24.81■■□□□ 1.56
HMGB1P09429 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.81■■□□□ 1.56
HMGB1P09429 AC138907.5-202ENST00000569484 235 ntBASIC24.81■■□□□ 1.56
HMGB1P09429 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGB1P09429 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC24.81■■□□□ 1.56
HMGB1P09429 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGB1P09429 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC24.81■■□□□ 1.56
HMGB1P09429 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGB1P09429 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGB1P09429 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGB1P09429 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGB1P09429 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
HMGB1P09429 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.8■■□□□ 1.56
HMGB1P09429 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
HMGB1P09429 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.8■■□□□ 1.56
HMGB1P09429 POU5F1P4-201ENST00000413175 1085 ntBASIC24.8■■□□□ 1.56
HMGB1P09429 CCDC92B-201ENST00000575506 885 ntBASIC24.8■■□□□ 1.56
HMGB1P09429 AC008175.2-201ENST00000612840 297 ntBASIC24.8■■□□□ 1.56
HMGB1P09429 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
HMGB1P09429 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
HMGB1P09429 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC24.8■■□□□ 1.56
HMGB1P09429 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
HMGB1P09429 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.79■■□□□ 1.56
HMGB1P09429 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC24.79■■□□□ 1.56
HMGB1P09429 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC24.79■■□□□ 1.56
HMGB1P09429 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
HMGB1P09429 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.79■■□□□ 1.56
HMGB1P09429 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC24.79■■□□□ 1.56
HMGB1P09429 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
HMGB1P09429 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.79■■□□□ 1.56
HMGB1P09429 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
HMGB1P09429 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
HMGB1P09429 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
HMGB1P09429 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
HMGB1P09429 PALM-207ENST00000590161 2137 ntTSL 4 BASIC24.79■■□□□ 1.56
HMGB1P09429 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
HMGB1P09429 AP004607.4-201ENST00000530158 1459 ntBASIC24.78■■□□□ 1.56
HMGB1P09429 PKD1P6-201ENST00000343738 4769 ntBASIC24.78■■□□□ 1.56
HMGB1P09429 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
HMGB1P09429 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.78■■□□□ 1.56
HMGB1P09429 SERP1-208ENST00000491660 830 ntTSL 2 BASIC24.78■■□□□ 1.56
HMGB1P09429 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.78■■□□□ 1.56
HMGB1P09429 KRT18P14-201ENST00000534205 1250 ntBASIC24.78■■□□□ 1.56
HMGB1P09429 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC24.78■■□□□ 1.56
HMGB1P09429 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
HMGB1P09429 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
HMGB1P09429 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC24.78■■□□□ 1.56
HMGB1P09429 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
HMGB1P09429 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGB1P09429 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
HMGB1P09429 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC24.77■■□□□ 1.56
HMGB1P09429 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
HMGB1P09429 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC24.77■■□□□ 1.56
HMGB1P09429 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.77■■□□□ 1.56
HMGB1P09429 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.77■■□□□ 1.56
HMGB1P09429 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.77■■□□□ 1.56
HMGB1P09429 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
HMGB1P09429 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGB1P09429 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
HMGB1P09429 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC24.77■■□□□ 1.56
HMGB1P09429 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.77■■□□□ 1.56
HMGB1P09429 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGB1P09429 AC061975.6-201ENST00000579045 1553 ntBASIC24.76■■□□□ 1.55
HMGB1P09429 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGB1P09429 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.76■■□□□ 1.55
HMGB1P09429 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC24.76■■□□□ 1.55
HMGB1P09429 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.76■■□□□ 1.55
HMGB1P09429 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
HMGB1P09429 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.76■■□□□ 1.55
HMGB1P09429 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
HMGB1P09429 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGB1P09429 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGB1P09429 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGB1P09429 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
HMGB1P09429 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
HMGB1P09429 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC24.75■■□□□ 1.55
HMGB1P09429 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGB1P09429 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGB1P09429 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGB1P09429 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.75■■□□□ 1.55
HMGB1P09429 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
HMGB1P09429 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
HMGB1P09429 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.75■■□□□ 1.55
HMGB1P09429 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGB1P09429 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
HMGB1P09429 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGB1P09429 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC24.74■■□□□ 1.55
HMGB1P09429 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC24.74■■□□□ 1.55
HMGB1P09429 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
HMGB1P09429 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC24.74■■□□□ 1.55
HMGB1P09429 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms