Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RAF1P04049 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.98■□□□□ 0.63
RAF1P04049 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.97■□□□□ 0.63
RAF1P04049 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.97■□□□□ 0.63
RAF1P04049 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.97■□□□□ 0.63
RAF1P04049 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.97■□□□□ 0.63
RAF1P04049 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.97■□□□□ 0.63
RAF1P04049 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.97■□□□□ 0.63
RAF1P04049 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.97■□□□□ 0.63
RAF1P04049 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RAF1P04049 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RAF1P04049 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAF1P04049 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
RAF1P04049 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.96■□□□□ 0.63
RAF1P04049 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.96■□□□□ 0.63
RAF1P04049 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.96■□□□□ 0.63
RAF1P04049 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RAF1P04049 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.96■□□□□ 0.63
RAF1P04049 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RAF1P04049 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
RAF1P04049 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.96■□□□□ 0.63
RAF1P04049 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAF1P04049 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.95■□□□□ 0.62
RAF1P04049 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RAF1P04049 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.95■□□□□ 0.62
RAF1P04049 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.95■□□□□ 0.62
RAF1P04049 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
RAF1P04049 AC073111.5-205ENST00000641717 521 ntBASIC18.95■□□□□ 0.62
RAF1P04049 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.95■□□□□ 0.62
RAF1P04049 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.95■□□□□ 0.62
RAF1P04049 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.95■□□□□ 0.62
RAF1P04049 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAF1P04049 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAF1P04049 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
RAF1P04049 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.94■□□□□ 0.62
RAF1P04049 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RAF1P04049 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAF1P04049 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RAF1P04049 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAF1P04049 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAF1P04049 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
RAF1P04049 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAF1P04049 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.94■□□□□ 0.62
RAF1P04049 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.94■□□□□ 0.62
RAF1P04049 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAF1P04049 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.94■□□□□ 0.62
RAF1P04049 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.94■□□□□ 0.62
RAF1P04049 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.94■□□□□ 0.62
RAF1P04049 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RAF1P04049 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RAF1P04049 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RAF1P04049 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
RAF1P04049 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.93■□□□□ 0.62
RAF1P04049 CDCA4P2-201ENST00000441182 718 ntBASIC18.93■□□□□ 0.62
RAF1P04049 AC026185.1-201ENST00000445748 174 ntBASIC18.93■□□□□ 0.62
RAF1P04049 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.93■□□□□ 0.62
RAF1P04049 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.93■□□□□ 0.62
RAF1P04049 RAP2CP1-201ENST00000605103 478 ntBASIC18.93■□□□□ 0.62
RAF1P04049 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RAF1P04049 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.93■□□□□ 0.62
RAF1P04049 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms