Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
PCF11O94913 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC33.06■■■□□ 2.88
PCF11O94913 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC33.06■■■□□ 2.88
PCF11O94913 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC33.06■■■□□ 2.88
PCF11O94913 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC33.06■■■□□ 2.88
PCF11O94913 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
PCF11O94913 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC33.06■■■□□ 2.88
PCF11O94913 RHEB-204ENST00000472642 900 ntTSL 3 BASIC33.06■■■□□ 2.88
PCF11O94913 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC33.06■■■□□ 2.88
PCF11O94913 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC33.06■■■□□ 2.88
PCF11O94913 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC33.06■■■□□ 2.88
PCF11O94913 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
PCF11O94913 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
PCF11O94913 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC33.05■■■□□ 2.88
PCF11O94913 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC33.05■■■□□ 2.88
PCF11O94913 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
PCF11O94913 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC33.05■■■□□ 2.88
PCF11O94913 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC33.05■■■□□ 2.88
PCF11O94913 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC33.05■■■□□ 2.88
PCF11O94913 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC33.05■■■□□ 2.88
PCF11O94913 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC33.05■■■□□ 2.88
PCF11O94913 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC33.05■■■□□ 2.88
PCF11O94913 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC33.04■■■□□ 2.88
PCF11O94913 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC33.04■■■□□ 2.88
PCF11O94913 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC33.04■■■□□ 2.88
PCF11O94913 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
PCF11O94913 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
PCF11O94913 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC33.04■■■□□ 2.88
PCF11O94913 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC33.04■■■□□ 2.88
PCF11O94913 AC091874.3-201ENST00000512672 1195 ntBASIC33.04■■■□□ 2.88
PCF11O94913 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC33.04■■■□□ 2.88
PCF11O94913 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC33.04■■■□□ 2.88
PCF11O94913 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
PCF11O94913 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC33.03■■■□□ 2.88
PCF11O94913 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC33.03■■■□□ 2.88
PCF11O94913 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC33.03■■■□□ 2.88
PCF11O94913 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC33.03■■■□□ 2.88
PCF11O94913 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
PCF11O94913 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC33.03■■■□□ 2.88
PCF11O94913 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC33.03■■■□□ 2.88
PCF11O94913 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
PCF11O94913 KRT18P29-201ENST00000397031 1267 ntBASIC33.03■■■□□ 2.88
PCF11O94913 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC33.03■■■□□ 2.88
PCF11O94913 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC33.03■■■□□ 2.88
PCF11O94913 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC33.03■■■□□ 2.88
PCF11O94913 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC33.03■■■□□ 2.88
PCF11O94913 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
PCF11O94913 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
PCF11O94913 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
PCF11O94913 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC33.02■■■□□ 2.88
PCF11O94913 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC33.02■■■□□ 2.88
PCF11O94913 AL591742.1-201ENST00000604433 565 ntBASIC33.02■■■□□ 2.88
PCF11O94913 AC008694.1-202ENST00000636953 945 ntBASIC33.02■■■□□ 2.88
PCF11O94913 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC33.02■■■□□ 2.88
PCF11O94913 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
PCF11O94913 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
PCF11O94913 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC33.01■■■□□ 2.88
PCF11O94913 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC33.01■■■□□ 2.88
PCF11O94913 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC33.01■■■□□ 2.88
PCF11O94913 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC33.01■■■□□ 2.88
PCF11O94913 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC33.01■■■□□ 2.88
PCF11O94913 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
PCF11O94913 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
PCF11O94913 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
PCF11O94913 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
PCF11O94913 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
PCF11O94913 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
PCF11O94913 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
PCF11O94913 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
PCF11O94913 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC33.01■■■□□ 2.87
PCF11O94913 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC33.01■■■□□ 2.87
PCF11O94913 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC33.01■■■□□ 2.87
PCF11O94913 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
PCF11O94913 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
PCF11O94913 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC33■■■□□ 2.87
PCF11O94913 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC33■■■□□ 2.87
PCF11O94913 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
PCF11O94913 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC33■■■□□ 2.87
PCF11O94913 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
PCF11O94913 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
PCF11O94913 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC33■■■□□ 2.87
PCF11O94913 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC33■■■□□ 2.87
PCF11O94913 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC33■■■□□ 2.87
PCF11O94913 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC33■■■□□ 2.87
PCF11O94913 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC33■■■□□ 2.87
PCF11O94913 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
PCF11O94913 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
PCF11O94913 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
PCF11O94913 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC32.99■■■□□ 2.87
PCF11O94913 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
PCF11O94913 AL596275.1-201ENST00000423464 877 ntBASIC32.99■■■□□ 2.87
PCF11O94913 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC32.99■■■□□ 2.87
PCF11O94913 KRT17P1-201ENST00000399211 1546 ntBASIC32.99■■■□□ 2.87
PCF11O94913 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
PCF11O94913 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC32.99■■■□□ 2.87
PCF11O94913 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC32.98■■■□□ 2.87
PCF11O94913 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC32.98■■■□□ 2.87
PCF11O94913 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC32.98■■■□□ 2.87
PCF11O94913 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
PCF11O94913 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms