Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.46■■□□□ 1.51
CDKL5O76039 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
CDKL5O76039 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDKL5O76039 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.51
CDKL5O76039 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.51
CDKL5O76039 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDKL5O76039 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC24.45■■□□□ 1.5
CDKL5O76039 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
CDKL5O76039 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
CDKL5O76039 TERF1P2-201ENST00000583350 1212 ntBASIC24.45■■□□□ 1.5
CDKL5O76039 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.45■■□□□ 1.5
CDKL5O76039 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDKL5O76039 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDKL5O76039 EFS-203ENST00000429593 2610 ntTSL 2 BASIC24.45■■□□□ 1.5
CDKL5O76039 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CDKL5O76039 AF106564.1-201ENST00000607058 2553 ntBASIC24.44■■□□□ 1.5
CDKL5O76039 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.44■■□□□ 1.5
CDKL5O76039 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CDKL5O76039 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDKL5O76039 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
CDKL5O76039 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDKL5O76039 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC24.43■■□□□ 1.5
CDKL5O76039 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC24.43■■□□□ 1.5
CDKL5O76039 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDKL5O76039 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDKL5O76039 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.43■■□□□ 1.5
CDKL5O76039 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC24.43■■□□□ 1.5
CDKL5O76039 AL049796.1-201ENST00000565336 1766 ntBASIC24.43■■□□□ 1.5
CDKL5O76039 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDKL5O76039 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.43■■□□□ 1.5
CDKL5O76039 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDKL5O76039 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDKL5O76039 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDKL5O76039 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CDKL5O76039 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.42■■□□□ 1.5
CDKL5O76039 RAB43-208ENST00000615093 783 ntTSL 5 BASIC24.42■■□□□ 1.5
CDKL5O76039 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.42■■□□□ 1.5
CDKL5O76039 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDKL5O76039 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
CDKL5O76039 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC24.42■■□□□ 1.5
CDKL5O76039 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDKL5O76039 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDKL5O76039 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDKL5O76039 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CDKL5O76039 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24.41■■□□□ 1.5
CDKL5O76039 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CDKL5O76039 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDKL5O76039 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CDKL5O76039 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDKL5O76039 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDKL5O76039 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.41■■□□□ 1.5
CDKL5O76039 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.41■■□□□ 1.5
CDKL5O76039 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.41■■□□□ 1.5
CDKL5O76039 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDKL5O76039 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDKL5O76039 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDKL5O76039 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
CDKL5O76039 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDKL5O76039 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC24.4■■□□□ 1.5
CDKL5O76039 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDKL5O76039 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC24.4■■□□□ 1.5
CDKL5O76039 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDKL5O76039 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CDKL5O76039 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDKL5O76039 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC24.4■■□□□ 1.5
CDKL5O76039 CCDC92B-201ENST00000575506 885 ntBASIC24.4■■□□□ 1.5
CDKL5O76039 AC008175.2-201ENST00000612840 297 ntBASIC24.4■■□□□ 1.5
CDKL5O76039 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDKL5O76039 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDKL5O76039 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDKL5O76039 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC24.4■■□□□ 1.5
CDKL5O76039 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDKL5O76039 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDKL5O76039 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
CDKL5O76039 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
CDKL5O76039 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC24.39■■□□□ 1.5
CDKL5O76039 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDKL5O76039 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
CDKL5O76039 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.39■■□□□ 1.49
CDKL5O76039 POU5F1P4-201ENST00000413175 1085 ntBASIC24.39■■□□□ 1.49
CDKL5O76039 SERP1-208ENST00000491660 830 ntTSL 2 BASIC24.39■■□□□ 1.49
CDKL5O76039 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC24.39■■□□□ 1.49
CDKL5O76039 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.39■■□□□ 1.49
CDKL5O76039 AC138907.5-202ENST00000569484 235 ntBASIC24.39■■□□□ 1.49
CDKL5O76039 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CDKL5O76039 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CDKL5O76039 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CDKL5O76039 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC24.38■■□□□ 1.49
CDKL5O76039 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDKL5O76039 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CDKL5O76039 KRT18P14-201ENST00000534205 1250 ntBASIC24.38■■□□□ 1.49
CDKL5O76039 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC24.38■■□□□ 1.49
CDKL5O76039 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.38■■□□□ 1.49
CDKL5O76039 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDKL5O76039 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC24.38■■□□□ 1.49
CDKL5O76039 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
CDKL5O76039 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDKL5O76039 AP004607.4-201ENST00000530158 1459 ntBASIC24.38■■□□□ 1.49
CDKL5O76039 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC24.37■■□□□ 1.49
CDKL5O76039 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms