Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
UPK3AO75631 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
UPK3AO75631 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
UPK3AO75631 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.82■□□□□ 0.6
UPK3AO75631 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
UPK3AO75631 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
UPK3AO75631 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.81■□□□□ 0.6
UPK3AO75631 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
UPK3AO75631 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
UPK3AO75631 MIR935-201ENST00000401179 91 ntBASIC18.81■□□□□ 0.6
UPK3AO75631 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.81■□□□□ 0.6
UPK3AO75631 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
UPK3AO75631 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
UPK3AO75631 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UPK3AO75631 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.81■□□□□ 0.6
UPK3AO75631 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.81■□□□□ 0.6
UPK3AO75631 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
UPK3AO75631 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.8■□□□□ 0.6
UPK3AO75631 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
UPK3AO75631 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.8■□□□□ 0.6
UPK3AO75631 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.8■□□□□ 0.6
UPK3AO75631 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
UPK3AO75631 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.8■□□□□ 0.6
UPK3AO75631 AC079140.4-201ENST00000507448 529 ntBASIC18.8■□□□□ 0.6
UPK3AO75631 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.8■□□□□ 0.6
UPK3AO75631 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.8■□□□□ 0.6
UPK3AO75631 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.8■□□□□ 0.6
UPK3AO75631 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPK3AO75631 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 DUX4L2-201ENST00000561772 1275 ntBASIC18.79■□□□□ 0.6
UPK3AO75631 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.79■□□□□ 0.6
UPK3AO75631 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
UPK3AO75631 DUX4L6-201ENST00000626483 1275 ntBASIC18.79■□□□□ 0.6
UPK3AO75631 DUX4L1-201ENST00000627662 1275 ntBASIC18.79■□□□□ 0.6
UPK3AO75631 DUX4L8-201ENST00000629013 1275 ntBASIC18.79■□□□□ 0.6
UPK3AO75631 DUX4L3-201ENST00000630187 1275 ntBASIC18.79■□□□□ 0.6
UPK3AO75631 DUX4L7-201ENST00000630678 1275 ntBASIC18.79■□□□□ 0.6
UPK3AO75631 DUX4L5-201ENST00000630834 1275 ntBASIC18.79■□□□□ 0.6
UPK3AO75631 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
UPK3AO75631 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.79■□□□□ 0.6
UPK3AO75631 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.79■□□□□ 0.6
UPK3AO75631 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
UPK3AO75631 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK3AO75631 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPK3AO75631 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPK3AO75631 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK3AO75631 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.78■□□□□ 0.6
UPK3AO75631 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.78■□□□□ 0.6
UPK3AO75631 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.78■□□□□ 0.6
UPK3AO75631 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPK3AO75631 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.78■□□□□ 0.6
UPK3AO75631 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
UPK3AO75631 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK3AO75631 SLC25A24-204ENST00000569674 2357 ntBASIC18.78■□□□□ 0.6
UPK3AO75631 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.78■□□□□ 0.6
UPK3AO75631 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.77■□□□□ 0.6
UPK3AO75631 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.77■□□□□ 0.6
UPK3AO75631 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.77■□□□□ 0.6
UPK3AO75631 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
UPK3AO75631 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.77■□□□□ 0.6
UPK3AO75631 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
UPK3AO75631 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK3AO75631 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
UPK3AO75631 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
UPK3AO75631 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms