Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
CCDC188H7C350 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC188H7C350 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.86■■□□□ 1.09
CCDC188H7C350 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CCDC188H7C350 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.86■■□□□ 1.09
CCDC188H7C350 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.86■■□□□ 1.09
CCDC188H7C350 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
CCDC188H7C350 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC188H7C350 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC188H7C350 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CCDC188H7C350 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC188H7C350 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC188H7C350 SRD5A1P1-201ENST00000442297 786 ntBASIC21.85■■□□□ 1.09
CCDC188H7C350 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC188H7C350 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC188H7C350 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC188H7C350 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC188H7C350 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC188H7C350 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC188H7C350 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CCDC188H7C350 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC188H7C350 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CCDC188H7C350 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC188H7C350 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC188H7C350 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
CCDC188H7C350 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.83■■□□□ 1.09
CCDC188H7C350 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC188H7C350 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CCDC188H7C350 MIR3621-201ENST00000580529 85 ntBASIC21.83■■□□□ 1.09
CCDC188H7C350 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.83■■□□□ 1.09
CCDC188H7C350 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
CCDC188H7C350 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
CCDC188H7C350 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC188H7C350 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.83■■□□□ 1.08
CCDC188H7C350 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC188H7C350 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 AL138724.1-201ENST00000606771 1088 ntBASIC21.82■■□□□ 1.08
CCDC188H7C350 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
CCDC188H7C350 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CCDC188H7C350 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
CCDC188H7C350 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC188H7C350 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC188H7C350 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 AC121338.2-201ENST00000622535 1744 ntBASIC21.81■■□□□ 1.08
CCDC188H7C350 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.81■■□□□ 1.08
CCDC188H7C350 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC188H7C350 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CCDC188H7C350 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC188H7C350 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC188H7C350 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC188H7C350 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC188H7C350 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC188H7C350 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC188H7C350 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC188H7C350 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC188H7C350 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC188H7C350 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
CCDC188H7C350 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC188H7C350 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CCDC188H7C350 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CCDC188H7C350 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC188H7C350 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC188H7C350 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC188H7C350 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
CCDC188H7C350 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC188H7C350 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC188H7C350 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
CCDC188H7C350 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC188H7C350 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC188H7C350 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CCDC188H7C350 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.79■■□□□ 1.08
CCDC188H7C350 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms