Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHISA3A0PJX4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SHISA3A0PJX4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHISA3A0PJX4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SHISA3A0PJX4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHISA3A0PJX4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.37■□□□□ 0.53
SHISA3A0PJX4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 pRNA.6-201ENST00000610482 90 ntBASIC18.36■□□□□ 0.53
SHISA3A0PJX4 pRNA.5-201ENST00000612139 90 ntBASIC18.36■□□□□ 0.53
SHISA3A0PJX4 pRNA.11-201ENST00000618423 90 ntBASIC18.36■□□□□ 0.53
SHISA3A0PJX4 pRNA.13-201ENST00000619112 90 ntBASIC18.36■□□□□ 0.53
SHISA3A0PJX4 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.36■□□□□ 0.53
SHISA3A0PJX4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 MTDHP2-201ENST00000601468 714 ntBASIC18.35■□□□□ 0.53
SHISA3A0PJX4 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 AL512408.1-201ENST00000569378 2000 ntBASIC18.35■□□□□ 0.53
SHISA3A0PJX4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHISA3A0PJX4 AL162377.1-201ENST00000618844 1793 ntBASIC18.35■□□□□ 0.53
SHISA3A0PJX4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 AL033527.3-201ENST00000566366 1196 ntBASIC18.34■□□□□ 0.53
SHISA3A0PJX4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHISA3A0PJX4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHISA3A0PJX4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SHISA3A0PJX4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 AC068587.7-201ENST00000641602 218 ntBASIC18.33■□□□□ 0.52
SHISA3A0PJX4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.33■□□□□ 0.52
SHISA3A0PJX4 AC007225.1-201ENST00000566331 1836 ntBASIC18.33■□□□□ 0.52
SHISA3A0PJX4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 AL020996.1-203ENST00000536896 2307 ntBASIC18.32■□□□□ 0.52
SHISA3A0PJX4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHISA3A0PJX4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 AP004607.7-201ENST00000527152 1677 ntBASIC18.31■□□□□ 0.52
SHISA3A0PJX4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHISA3A0PJX4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms