Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 AL031602.1-201ENST00000633169 911 ntBASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 BX664725.1-201ENST00000438252 379 ntBASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USH1CQ9Y6N9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USH1CQ9Y6N9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 OR7E47P-201ENST00000546390 1422 ntBASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.9■□□□□ 0.94
USH1CQ9Y6N9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.89■□□□□ 0.94
USH1CQ9Y6N9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
USH1CQ9Y6N9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 AL033527.3-201ENST00000566366 1196 ntBASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 AC012354.3-201ENST00000623734 483 ntBASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 AC073314.1-201ENST00000568729 2216 ntBASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USH1CQ9Y6N9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 AC092028.1-203ENST00000608262 953 ntBASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USH1CQ9Y6N9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 AFG3L1P-217ENST00000557444 2447 ntBASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms