Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 RNF165-205ENST00000588679 2904 ntBASIC19.55■□□□□ 0.72
USE1Q9NZ43 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 AC006128.1-201ENST00000624704 1661 ntBASIC19.55■□□□□ 0.72
USE1Q9NZ43 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
USE1Q9NZ43 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USE1Q9NZ43 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
USE1Q9NZ43 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.54■□□□□ 0.72
USE1Q9NZ43 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
USE1Q9NZ43 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
USE1Q9NZ43 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USE1Q9NZ43 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.53■□□□□ 0.72
USE1Q9NZ43 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USE1Q9NZ43 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.52■□□□□ 0.72
USE1Q9NZ43 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USE1Q9NZ43 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USE1Q9NZ43 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USE1Q9NZ43 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USE1Q9NZ43 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USE1Q9NZ43 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USE1Q9NZ43 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.52■□□□□ 0.72
USE1Q9NZ43 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USE1Q9NZ43 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USE1Q9NZ43 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.52■□□□□ 0.71
USE1Q9NZ43 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.52■□□□□ 0.71
USE1Q9NZ43 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USE1Q9NZ43 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USE1Q9NZ43 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USE1Q9NZ43 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USE1Q9NZ43 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
USE1Q9NZ43 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USE1Q9NZ43 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms