Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.2■□□□□ 0.66
CLN6Q9NWW5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.2■□□□□ 0.66
CLN6Q9NWW5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
CLN6Q9NWW5 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLN6Q9NWW5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLN6Q9NWW5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLN6Q9NWW5 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CLN6Q9NWW5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 GABARAPL3-202ENST00000624044 1851 ntBASIC19.18■□□□□ 0.66
CLN6Q9NWW5 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 AC068587.7-201ENST00000641602 218 ntBASIC19.18■□□□□ 0.66
CLN6Q9NWW5 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.18■□□□□ 0.66
CLN6Q9NWW5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 AC239859.2-201ENST00000444165 318 ntBASIC19.17■□□□□ 0.66
CLN6Q9NWW5 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLN6Q9NWW5 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 TSPY9P-201ENST00000440215 945 ntBASIC19.16■□□□□ 0.66
CLN6Q9NWW5 TSPY11P-201ENST00000442607 1045 ntBASIC19.16■□□□□ 0.66
CLN6Q9NWW5 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 AC241377.3-202ENST00000626088 1088 ntBASIC19.16■□□□□ 0.66
CLN6Q9NWW5 AC241585.3-202ENST00000628937 1088 ntBASIC19.16■□□□□ 0.66
CLN6Q9NWW5 AC245100.8-202ENST00000629247 1058 ntBASIC19.16■□□□□ 0.66
CLN6Q9NWW5 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLN6Q9NWW5 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 AC133637.1-201ENST00000624115 1537 ntBASIC19.15■□□□□ 0.66
CLN6Q9NWW5 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 AL451085.2-201ENST00000605085 799 ntBASIC19.15■□□□□ 0.66
CLN6Q9NWW5 AL117332.1-201ENST00000622628 974 ntBASIC19.15■□□□□ 0.66
CLN6Q9NWW5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLN6Q9NWW5 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLN6Q9NWW5 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLN6Q9NWW5 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
CLN6Q9NWW5 AC087239.1-201ENST00000622671 572 ntBASIC19.14■□□□□ 0.65
CLN6Q9NWW5 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLN6Q9NWW5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
CLN6Q9NWW5 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.14■□□□□ 0.65
CLN6Q9NWW5 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms