Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 RPS2P7-201ENST00000447334 885 ntBASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 CR559946.2-201ENST00000623684 991 ntBASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VCX3AQ9NNX9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VCX3AQ9NNX9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
VCX3AQ9NNX9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VCX3AQ9NNX9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
VCX3AQ9NNX9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCX3AQ9NNX9 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VCX3AQ9NNX9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VCX3AQ9NNX9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VCX3AQ9NNX9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.64■□□□□ 0.73
VCX3AQ9NNX9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCX3AQ9NNX9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCX3AQ9NNX9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCX3AQ9NNX9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCX3AQ9NNX9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 OXCT2P1-201ENST00000447263 1535 ntBASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.62■□□□□ 0.73
VCX3AQ9NNX9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 AC011551.1-201ENST00000614101 683 ntBASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCX3AQ9NNX9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms